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Die kirchlichen Statements zur Coronaschutzimpfung in der Reflexion – eine Kritik und ein Impuls für die Zukunft (2023)
Lindermüller, Patrick
Artykuł dotyczy problematyki trafności argumentacji etycznej zastosowanej w oświadczeniach kościelnych na temat szczepień przeciw koronawirusowi. Chodzi o dokumenty wydane w tej kwestii przez Kongregację Nauki Wiary, Komisję Konferencji Episkopatów Unii Europejskiej (COMECE/CEC) oraz Konferencję Episkopatu Niemiec. Problematyka została wyjaśniona w trzech punktach. Na początku zostały przedstawione linie argumentacyjne zawarte w wydanych oświadczeniach. Zasadniczo nawiązują one do pojęcia dobra wspólnego, solidarności oraz teologicznego ujęcia miłości rozumianej w sensie troski (care). W dalszej kolejności argumentacje zostały poddane krytyce. Krytycznie ujmując, w szczegółowych aspektach można podanym racjom postawić zarzuty: słabej reprezentatywności, słabego wyjaśnienia oraz słabej złożoności. Na końcu tekst formuje impulsy podpowiadające, jak w przyszłości oświadczenia tego typu mogłyby być formułowane w sposób bardziej udany.
"Narrationen des Bösen" (2025)
Lindermüller, Patrick
Die Methode der Negativen Dialektik als Mittel zur Lösung aus (theologisch-)ethischen Kontroverspositionen – ein Impuls (2021)
Lindermüller, Patrick
Todd Peters, Rebecca/Kamitsuka, Margaret D. (eds.): Abortion and Religion: Jewish, Christian, and Muslim Perspectives, London: T&T Clark, 2023. – xv, 452 p. [Book Review] (2025)
Lindermüller, Patrick
THU0088 Iron deficiency and low erythropoietin concentrations are frequent anemia causing factors in rheumatoid arthritis [Abstract] (2016)
Möller, B. ; Leichtle, Alexander B. ; Meyer, P. ; Fiedler, M. ; Finckh, A. ; Kyburz, D. ; Gabay, C. ; Villiger, P. M.
Comparing variable and feature selection strategies for prediction - protocol of a simulation study in low-dimensional transplantation data (2025)
Hoessly, Linard ; Frossard, Jaromil ; Schwab, Simon ; Chammartin, Frédérique ; Leichtle, Alexander ; Schreiber, Peter W. ; Neofytos, Dionysios ; Koller, Michael
The integration of machine learning methodologies has become prevalent in the development of clinical prediction models, often suggesting superior performance compared to traditional statistical techniques. Within the scope of low-dimensional datasets, encompassing both classical and machine learning paradigms, we plan to undertake a comparison of variable selection methodologies through simulation-based analysis. The principal aim is the comparison of the variable selection strategies with respect to relative predictive accuracy and its variability, with a secondary aim the comparison of descriptive accuracy. We use six distinct statistical learning approaches across both data generation and model learning. The present manuscript is a protocol for the corresponding simulation study registration (Study registration Open Science Framework ID: k6c8f). We describe the planned steps through the Aims, Data, Estimands, Methods, and Performance framework for simulation study design and reporting.
In response to the letter to the editor on our manuscript "High sensitive cardiac troponin T: Testing the test" by Dr. Badertscher [Letter] (2017)
Haider, Dominik ; Klemenz, Thomas ; Fiedler, Georg Martin ; Nakas, Christos T. ; Exadaktylos, Aristomeins K. ; Leichtle, Alexander
Abstract 1824: Clinical evaluation of self obtained capillary blood and dried blood spots for cyclosporine C0 and C2 monitoring in transplant recipients [Abstract] (2006)
Leichtle, Alexander ; Fiedler, Georg Martin ; Gäbel, Gábor ; Ceglarek, Uta ; Baumann, Sven ; Witzigmann, Helmut ; Hauss, Johann ; Thiery, Joachim
Neue "-omics"-Technologien und die Herausforderungen der Dateninterpretation (2013)
Leichtle, Alexander
COVERAGE - comparing variable and feature selection strategies for prediction - protocol of a simulation study in low-dimensional transplantation data [Study protocol] (2025)
Hoessly, Linard ; Schwab, Simon ; Chammartin, Frédérique ; Leichtle, Alexander ; Schreiber, Peter Werner ; Neofytos, Dionysios ; Frossard, Jaromil ; Koller, Michael
The integration of machine learning methodologies has become prevalent in the development of clinical prediction models, often suggesting superior performance compared to traditional statistical techniques. Within the scope of low-dimensional datasets, encompassing both classical and machine learning paradigms, we plan to undertake a comparison of variable selection methodologies through simulation-based analysis. The principal aim is the comparison of the variable selection strategies with respect to relative predictive accuracy and its variability, with a secondary aim the comparison of descriptive accuracy. We use six distinct statistical learning approaches across both data generation and model learning. The present manuscript is a protocol for the corresponding simulation study. We describe the planned steps through the Aims, Data, Estimands, Methods, and Performance framework for simulation study design and reporting.
Klinische Proteomics – Chance für die Labormedizin? (2005)
Ceglarek, Uta ; Fiedler, Georg Martin ; Baumann, Sven ; Lembcke, Jan ; Leichtle, Alexander ; Thiery, Joachim
Big Data: time to remodel diagnostic paths [Abstract] (2014)
Leichtle, Alexander ; Liniger, Z. ; Lindner, G. ; Fiedler, G. M.
Is recovery testing a relevant tool to validate the assessment of serum thyroglobulin levels? [Abstract] (2006)
Kratzsch, J. ; Gäbel, G. ; Leichtle, Alexander ; Otto, L. ; Thiery, J.
Mo-P1:115 Evaluation of plant sterol serum levels in 4222 volunteers of the Monica survey [Abstract] (2006)
Ceglarek, U. ; Fiedler, G. M. ; Lembeke, J. ; Baumann, S. ; Leichtle, Alexander ; Döring, A. ; Löwel, H. ; Wichmann, E. ; Thiery, J.
Predominance of calcium pyrophosphate crystals in synovial fluid samples of patients at a large tertiary center (2025)
Manigold, Tobias ; Leichtle, Alexander
Background: Crystal arthritides represent the most common inflammatory rheumatologic condition. While the prevalence of gouty arthritis by monosodium urate (MSU) is well established, the prevalences of calciumpyrophosphat (CPP) and basic calcium pyrophosphate (ARP) arthritis are less clear. We herein sought to assess the prevalence and inflammatory characteristics of crystal arthritides at our institution, the biggest tertiary center in Switzerland. Methods: A total of 5036 synovial fluid (SF) samples were analyzed with regard to crystal positivity as well as joint, age, and sex distribution in affected patients. We furthermore compared inflammatory and non-inflammatory SF samples for yields of their Polymorphonuclear (PMN) fractions. Results: About half of all samples were derived from knee joints, a male/female ratio up to 10.1:1 among the MSU-positive, and a clear shift towards elder patients with CPP–arthritis was seen. These findings were in line with previous studies and suggest good comparability of our cohort. Of note, 21.9% of all samples were CPP positive, whereas 15.3% and 9.5% were positive for MSU and ARP/alizarin-red positive, respectively. Importantly, CPP crystals were predominant in inflammatory (58.9%) and non-inflammatory (65.7%) samples. By contrast, MSU crystals were significantly more often associated with synovitis (p < 0.001). Interestingly, higher PMN fractions were found in non-inflammatory MSU-positive samples (p < 0.01), whereas a similar trend was seen in CPP-positive samples. Conclusions: CPP arthritis represented the most frequent crystal arthritis form at our center. Higher PMN fractions in non-inflammatory samples with CPP and MSU crystals suggest subclinical inflammation and provide further arguments for earlier anti-inflammatory and uric acid-lowering therapies in patients with crystal deposits.
Independent prognostic value of MR-proANP levels in stroke patients is unaltered over time [Abstract] (2020)
Arnold, M. ; Nakas, C. ; Luft, A. ; Christ-Crain, M. ; Leichtle, Alexander B. ; Katan, M.
Machine learning-based short-term forecasting of COVID-19 hospital admissions using routine hospital patient data (2025)
Wohlfender, Martin S. ; Bouman, Judith A. ; Endrich, Olga ; Ramette, Alban ; Leichtle, Alexander B. ; Beldi, Guido ; Althaus, Christian L. ; Riou, Julien
During the COVID-19 pandemic, the field of infectious disease modeling advanced rapidly, with forecasting tools developed to track trends in transmission dynamics and anticipate potential shortages of critical resources such as hospital capacity. In this study, we compared short-term forecasting approaches for COVID-19 hospital admissions that generate forecasts one to five weeks ahead, using retrospective electronic health records. We extracted different features (e.g., daily emergency department visits) from an individual-level patient dataset covering six hospitals located in the region of Bern, Switzerland from February 2020 to June 2023. We then applied five methods – last-observation carried forward (baseline), linear regression, XGBoost and two types of neural networks – to time series using a leave-future-out training scheme with multiple cutting points and optimized hyperparameters. Performance was evaluated using the root mean square error between forecasts and observations. Generally, we found that XGBoost outperformed the other methods in predicting future hospital admissions. Our results also show that adding features such as the number of hospital admissions with fever and augmenting hospital data with measurements of viral concentration in wastewater improves forecast accuracy. This study offers a thorough and systematic comparison of methods applicable to routine hospital data for real-time epidemic forecasting. With the increasing availability and volume of electronic health records, improved forecasting methods will contribute to more precise and timely information during epidemic waves of COVID-19 and other respiratory viruses, thereby strengthening evidence-based public health decision-making.
THU208 Predicting treatment quality assessment of children with congenital adrenal hyperplasia using 24h urine metabolomics profiling and a machine learning-assisted approach [Abstract] (2023)
Abawi, Ozair ; Sommer, Grit ; Groessl, Michael ; Halbsguth, Ulrike ; Hannema, Sabine E. ; de Bruin, Christiaan ; Charmandari, Evangelia ; van den Akker, Erica L. T. ; Leichtle, Alexander B. ; Flueck, Christa E.
Disclosure: O. Abawi: None. G. Sommer: None. M. Groessl: None. U. Halbsguth: None. S.E. Hannema: None. C. de Bruin: None. E. Charmandari: None. E.L. van den Akker: None. A.B. Leichtle: None. C.E. Flueck: None. Introduction: Current treatment monitoring of children with congenital adrenal hyperplasia (CAH) relies on specialist’s interpretation of clinical and biochemical parameters, but remains dissatisfactory. Comprehensive 24h urine steroid profiling provides detailed insight into adrenal steroid pathways, but its merit in routine treatment monitoring of CAH is not yet established. Aim: To investigate whether 24h urine steroid profiling can predict treatment quality assessment in children with CAH using machine learning (ML). Methods: This prospective observational cohort study included children with genetically confirmed 21-hydroxylase deficiency. Children collected 24h urine at 2 outpatient clinic visits (mean 4.1 ± 0.7 months apart). Using gas chromatography-mass spectrometry, 40 adrenal steroids and metabolites from the classic, backdoor and 11-oxygenated pathways were analysed. Patients were classified as undertreated, optimally treated or overtreated by the pediatric endocrinologist based on detailed clinical and endocrinological evaluation including serum 17-hydroxyprogesterone and androstenedione. We used sparse partial least-squares discriminant analysis (sPLS-DA) to investigate optimal prediction of treatment quality assessment. This ML method computes components (combinations of all input variables) and selects the most discriminative parameters to classify samples (in our case optimally treated vs undertreated) by maximizing between-class variance. We computed area under the ROC-curve (AUC) of two sPLS-DA models: 1. using only 24h urine metabolites; 2. adding also clinical variables age, sex, pubertal status, CAH subtype (classic vs non-classic), medication (hydrocortisone [HC] vs prednisolone), daily HC-equivalent dose, Δbone age minus chronological age, ΔBMI-z, and Δheight-z. Results: We included 112 visits (68 [61%] optimally treated, 44 [39%] undertreated) of 59 patients: 27 (46%) girls, 46 (78%) classic CAH, 19 (32%) prepubertal. Mean age at first visit was 11.9 ± 4.0 years and mean BMI SDS 0.6 ± 1.1. SPLS-DA using 24h urine metabolites showed clear clustering of optimally treated patients on two components, while undertreated patients were more heterogenous (AUC 0.88; 95% CI 0.81-0.94). The model selected pregnanetriol and hydroxypregnanolon contributing to excluding undertreatment and 7 metabolites contributing to excluding optimal treatment: estradiol, cortison, tetrahydroaldosterone, androstenetriol, etiocholanolone, androstenediol, and α-dihydrocortison. Addition of clinical variables did not improve classification (AUC 0.90, 95% CI 0.84-0.96, P=0.59). Discussion: Using ML on 24h urine steroid profiling predicted treatment quality assessment in children with CAH even in absence of clinical data, suggesting that comprehensive 24h urine steroid profiling could improve treatment monitoring in children with CAH. Presentation: Thursday, June 15, 2023
OP0191 Dominating prevalence of calciumpyrophosphat (CPP) crystals among inflammatory synovial fluid samples in an unbiased analysis at the largest Swiss tertiary center [Abstract] (2024)
Manigold, T. ; Leichtle, Alexander B.
Data mining reference intervals by ICD-10 stratified differential distributions [Letter] (2024)
Blatter, Tobias U. ; Schär, David ; Witte, Harald ; Nakas, Christos T. ; Leichtle, Alexander B.
P01 Hypoglycemia is associated with increased mortality in patients with acute decompensated liver cirrhosis [Abstract] (2015)
Pfortmueller, C. ; Wiemann, C. ; Funk, G. C. ; Leichtle, Alexander B. ; Lindner, G. ; Fiedler, G. M. ; Exadaktylos, A.
MP359 FGF23 and markers of mineral metabolism in subjects with preserved renal function [Abstract] (2016)
Dhayat, Nasser ; Ackermann, Daniel ; Pruijm, Menno ; Ponte, Belen ; Ehret, Georg ; Guessous, Idris ; Leichtle, Alexander Benedikt ; Paccaud, Fred ; Mohaupt, Markus ; Fiedler, Georg-Martin ; Devuyst, Olivier ; Pechère-Bertschi, Antoinette ; Burnier, Michel ; Martin, Pierre-Yves ; Bochud, Murielle ; Vogt, Bruno ; Fuster, Daniel G.
Computed exercise plasma lactate concentrations: a conversion formula (2016)
Bally, Lia ; Zueger, Thomas ; Stettler, Christoph ; Leichtle, Alexander Benedikt
Objectives Blood lactate measurements are common as a marker of skeletal muscle metabolism in sport medicine. Due to the close equilibrium between the extracellular and intramyocellular space, plasma lactate is a more accurate estimate of muscle lactate. However, whole blood-based lactate measurements are more convenient in field use. The purpose of this investigation was therefore (1) to establish a plasma-converting lactate formula for field use, and (2) to validate the computed plasma lactate levels by comparison to a laboratory standard method. Design and methods A total of 91 venous samples were taken from 6 individuals with type 1 diabetes during resting and exercise conditions and assessed for whole blood and plasma lactate using the YSI 2300 analyzer. A linear model was applied to establish a formula for converting whole blood lactate to plasma lactate. The validity of computed plasma lactate values was assessed by comparison to a laboratory standard method. Results Whole blood YSI lactate could be converted to plasma YSI values (slope 1.66, intercept 0.12) for samples with normal hematocrit. Computed plasma levels compared to values determined by the laboratory standard method using Passing-Bablok regression yielded a slope of 1.03 (95%CI:0.99:1.08) with an intercept of -0.11 (95%CI:-0.18:-0.06). Conclusions Whole blood YSI lactate values can be reliably converted into plasma values which are in line with laboratory determined plasma measurements.
Predicting treatment outcome in congenital adrenal hyperplasia using urine steroidomics and machine learning (2025)
Abawi, Ozair ; Sommer, Grit ; Grössl, Michael ; Halbsguth, Ulrike ; du Toit, Therina ; Hannema, Sabine E. ; de Bruin, Christiaan ; Charmandari, Evangelia ; van den Akker, Erica L. T. ; Leichtle, Alexander B. ; Flück, Christa E.
Differential distributions: a refined methodology to indirect reference interval estimation by including patient's health status according to associated ICD-10 codes (2025)
Schär, David ; Blatter, Tobias U. ; Witte, Harald ; Stoyanov, Jivko ; Hersberger, Martin ; Nakas, Christos T. ; Leichtle, Alexander B.
Background Traditional methods for estimating reference intervals (RIs) using patient's blood test results from the clinical routine, typically remove outliers without considering the nuanced health statuses of patients. This removes a vast majority of test results for reference interval estimation without considering the actual health status of the patient. Methods We introduce the Differential Distribution Method (DDM) which uses laboratory routine data coded with ICD-10 to approximate an underlying non-diseased age and sex stratified population from mixed clinical data. By removing test results that stem from subpopulations significantly different from the general population, reference intervals can be generated stratified by sex and age, taking into account the associated health conditions of the patients as derived by the ICD-10 coding system. Results Applying the DDM to blood plasma potassium levels demonstrated its ability to adjust RIs dynamically across different patient groups. The method effectively differentiated RIs in a decade-based stratification, showing significant variability and tighter confidence intervals, particularly in older (above 60 years old) adults. The RIs were slightly wider with advancing age in both males and females, while their standard deviation was reduced by removing large portions of test results differing significantly, grouped by either their individual ICD-10 code or clusters of ICD-10 codes. Conclusions This DDM data mining approach offers a robust framework for RI inference by generating adjusted RIs that incorporate clinical nuances reflected in ICD-10 codes. This approach not only enhances the accuracy of patient diagnostics but also facilitates the identification of potential multimorbidities affecting laboratory results.
Cohort profile: Swiss BioRef: the building blocks of a nationwide IT infrastructure in Switzerland for generating precise reference intervals (2022)
Blatter, Tobias U. ; Witte, Harald ; Fasquelle-Lopez, Jules ; Raisaro, Jean Louis ; Leichtle, Alexander B.
Purpose Swiss BioRef is a nation-wide multicentre infrastructure project, the aim of which is to become a sustainable framework for the estimation and assessment of patient-group-specific reference intervals in laboratory medicine and beyond. In this unprecedented effort, nation-wide multidimensional data from multiple clinical laboratory databases has been combined under the common interoperable semantic framework of the Swiss Personalized Health Network (SPHN) initiative. The consolidated effort enables creating extremely detailed patient group-specific queries via intuitive web applications, allowing the generation of individualised, covariate adjusted reference intervals on-the-fly. Participants The project is a collaborative effort of four major hospitals in Switzerland, the University Hospital Bern (Inselspital, “Insel”), University Hospital Lausanne (CHUV), Swiss Spinal Cord Injury Cohort (“SwiSCI”) and the University Children’s Hospital Zurich (“KiSpi”), and two academic groups in Bern and in Lausanne. Findings to date Within the infrastructure we deployed, the laboratory data from four major hospitals (approximately 9 million measurements from 250’000 patients) is made available to two conceptually different web applications (one centralised and statistically detailed, one decentralised using distributed computing). They enable the inference of reference intervals for more than 40 blood test variables from clinical chemistry, haematology, point-of-care-testing, and coagulation testing, with various patient factors (such as age, sex and a combination of ICD-10 defined diagnoses) and analytical factors (such as type or unique identifiers) that can be used to generate precise reference intervals for the respective groups. Future plan Now that all required basic infrastructure elements for Swiss BioRef are deployed, we are evaluating inter-cohort transferability of semantic standards, “change tracking” in merged databases and biological variation of the blood test variables, in order to generate precise reference intervals. While adjusting the developed web-interfaces to suit the needs of the various end-users, we additionally plan to onboard new national and international partners. Strengths and limitations of this study The Swiss BioRef project is the first multi-cohort infrastructure in Switzerland for the estimation of precise reference intervals in laboratory medicine. With the BioRef consortium agreement a common framework for multi-cohort data sharing, hosting, and accessing has been thoroughly defined. The definition of interoperable data formats and data encoding for Swiss BioRef permits the fusion of the various data sources into a unified infrastructure. Due to differing data management systems at the individual clinical data warehouses, the harmonisation of data contributions requires significant effort which limits direct data provision. Two different web applications with varying data access architectures enable researchers to map the individual complexity of their patients into a substantiated statistical analysis to infer precise and highly relevant reference intervals. Needless to say, anticipating the requirements of an increasingly diverse user base remains a challenging task. Due to the modular expandable architecture of Swiss BioRef, potential national and international partners can easily access and even join the network.
Deployment of an automated Method Verification-Graphical User Interface (MV-GUI) software (2023)
Nagabhushana, Priyanka ; Rütsche, Cyrill ; Nakas, Christos ; Leichtle, Alexander B.
Clinical laboratories frequently conduct method verification studies to ensure that the process meets quality standards for its intended use, such as patient testing. They play a pivotal role in healthcare, but issues such as accurate statistical assessment and reporting of verification data often make these studies challenging. Missteps can lead to false conclusions about method performance, risking patient safety or leading to incorrect diagnoses. Despite a requirement for accredited labs to document method performance, existing solutions are often expensive and complex. Addressing these issues, we present Method Verification-Graphical User Interface (MV-GUI), a software package designed for ease of use. It is platform-independent, capable of statistical analysis, and generates accreditation-ready reports swiftly and efficiently. Users can input patient data from one or more .CSV files, and MV-GUI will produce comprehensive reports, including statistical comparison tables, regression plots, and Bland–Altman plots. While method validation, which establishes the performance of new diagnostic tools, remains a crucial concern for manufacturers, MV-GUI primarily streamlines the method verification process. The software aids both medical practitioners and researchers and is designed to be user-friendly, even for non-experienced users. Requiring no internet connection, MV-GUI can operate in restricted IT environments, making method verification widely accessible and efficient.
Direct, age- and gender-specific reference intervals: applying a modified M-estimator of the Yeo-Johnson transformation to clinical real-world data (2024)
Blatter, Tobias U. ; Nakas, Christos T. ; Leichtle, Alexander Benedikt
Objectives Reference intervals for the general clinical practice are expected to cover non-pathological values, but also reflect the underlying biological variation present in age- and gender-specific patient populations. Reference intervals can be inferred from routine patient data measured in high capacity using parametric approaches. Stratified reference distributions are obtained which may be transformed to normality via e.g. a Yeo-Johnson transformation. The estimation of the optimal transformation parameter for Yeo-Johnson through maximum likelihood can be highly influenced by the presence of outlying observations, resulting in biased reference interval estimates. Methods To reduce the influence of outlying observations on parametric reference interval estimation, a reweighted M-estimator approach for the Yeo-Johnson (YJ) transformation was utilised to achieve central normality in stratified reference populations for a variety of laboratory test results. The reweighted M-estimator for the YJ transformation offers a robust parametric approach to infer relevant reference intervals. Results The proposed method showcases robustness up to 15 % of outliers present in routine patient data, highlighting the applicability of the reweighted M-estimator in laboratory medicine. Furthermore, reference intervals are personalised based on the patients’ age and gender for a variety of analytes from routine patient data collected in a tertiary hospital, robustly reducing the dimensionality of the data for more data-driven approaches. Conclusions The method shows the advantages for estimating reference intervals directly and parametrically from routine patient data in order to provide expected reference ranges. This approach to locally inferred reference intervals allows a more nuanced comparison of patients’ test results.
Biomarker – vom Sein und Wesen (2015)
Leichtle, Alexander
Biomarker, ein inzwischen geradezu inflationär verwendeter Begriff! Während in den vergangenen Jahrzehnten die Bezeichnung „Marker“ vor allem mit Tumorerkrankungen und deren klinisch-chemischer Diagnostik verbunden war, hat die „-omics“-Welle der letzten Dekade eine Unmenge an neuen „Markern“ für alles und jedes in die medizinische Literatur gespült. Insbesondere der unkritische Umgang mit jenen Markern und die Unerfahrenheit derjenigen, die durch neue Techniken in vormals rein naturwissenschaftlichen Fachgebieten in die Lage versetzt wurden, diese neuen Marker zu messen, haben nicht nur zu einer großen Verunsicherung in bezug auf die Wertigkeit von Biomarkern an sich, sondern auch zu einer großen Enttäuschung in den wie Strohfeuer aufflammenden „-omics“-Disziplinen geführt. Kaum einer der oft hervorragend publizierten Biomarker hat den Weg in die Klinik gefunden, hochzitierten Wissenschaftlern konnten elementarste Fehler in (Prä-)analytik und Interpretation nachgewiesen werden und selbst die bisher als anerkannt angesehenen „klassischen“ Tumormarker sind vielfach in Misskredit geraten. Zu Unrecht! Denn mit alten wie neuen Markern hat die Labormedizin hervorragende Werkzeuge in der Hand, die, richtig angewandt, nicht nur das Potential haben, die Labordiagnostik zu revolutionieren, sondern auch das Gesicht des Faches verändern werden, weg von einer in vitro quantifizierenden Hilfsdisziplin hin zu einer integrativen und interpretativen Wissenschaft.
Real-world occurrence, therapy, and outcome of patients with class 2 or 3 BRAF compared with class 1 BRAF-mutated cancers (2024)
Pradervand, S. ; Freundler, N. ; Gosztonyi, B. ; Roncoroni, L. ; Achermann, R. ; Schwenk, T. ; de Fraipont, G. ; Garessus, J. ; Haefliger, S. ; Leichtle, Alexander B. ; Kiessling, M. K. ; Mueller-Focke, T. ; Krebs, F. S. ; Zoete, V. ; Tsantoulis, P. ; Michielin, O. ; Britschgi, C. ; Wicki, A.
Background BRAF V600 mutations are the epitome of targeted therapy. However, not much is known about non-V600 mutations. Using the new data infrastructure of the Swiss Personalized Oncology project of the Swiss Personalized Health Network (SPHN), we evaluated the fate of patients with cancer with non-V600 BRAF mutations in comparison to patients with class 1 mutations. Patients and methods In this retrospective observational multicenter study, we have assembled a cohort of 392 patients with class 1 and 154 patients with nonclass 1 BRAF mutations (76 colorectal cancers, 96 lung cancers, 297 melanomas, and 77 other cancers). We carried out outcome analyses between mutational classes and therapeutic subgroups. Results Overall survival (OS) did not differ significantly between patients with class 1 and nonclass 1 mutations. Upon treatment with BRAF/MEK inhibitors, patients with class 1 mutant melanoma showed numerically longer progression-free survival (PFS; 217 days) than patients with nonclass 1 mutant disease (73 days). Overall, in patients with class 2 or 3 mutations, BRAF and MEK inhibitors showed no benefit over other systemic therapies. However, specific class 2 mutations such as K601E may confer sensitivity to BRAF/MEK inhibitors, with two out of five patients achieving a PFS >400 days. Conclusions The diversity of BRAF mutations presents significant treatment challenges. Despite similar OS, nonclass 1 mutant tumors showed a trend toward lower PFS with BRAF/MEK blockade. Selected class 2 mutations may confer sensitivity to BRAF/MEK inhibitors. This highlights the rationale for a mutation, rather than class-specific, clinical approach against nonclass 1 BRAF-mutant tumors.
Bootstrap-based testing approaches for the assessment of the diagnostic accuracy of biomarkers subject to a limit of detection (2019)
Franco-Pereira, Alba M. ; Nakas, Christos T. ; Leichtle, Alexander B. ; Pardo, M. Carmen
SPHN/PHRT – MedCo in action: empowering the swiss molecular tumor board with privacy-preserving and real-time patient discovery (2020)
Raisaro, Jean Louis ; Troncoso-Pastoriza, Juan Ramòn ; Pradervand, Sylvain ; Cuendet, Michel ; Misbach, Mickael ; Sa, Joao ; Marino, Francesco ; Freundler, Nicolas ; Rosat, Nicolas ; Cavin, David ; Leichtle, Alexander ; Fellay, Jacques ; Michielin, Olivier ; Hubaux, Jean-Pierre
MedCo is the first operational system that makes sensitive medical-data available for research in a simple, privacy-conscious and secure way. It enables a consortium of clinical sites to collectively protect their data and to securely share them with investigators, without single points of failure. In this short paper, we report on our ongoing effort for the operational deployment of MedCo within the context of the Swiss Personalized Health Network (SPHN) for the Swiss Molecular Tumor Board.
Pathological cerebrospinal fluid protein concentration and albumin quotient at relapse predicts short-term disability progression in multiple sclerosis: a retrospective single center observational study (2020)
Diem, Lara ; Bürge, Maxine ; Leichtle, Alexander ; Hakim, Arsany ; Chan, Andrew ; Salmen, Anke ; Evangelopoulos, Maria-Eleptheria ; Hoepner, Robert
Background: Blood–brain barrier dysfunction in active multiple sclerosis (MS) lesions leads to pathological changes of cerebrospinal fluid (CSF). Theoretically, CSF analyses could help to predict relapse recovery and the course of disability. In this monocentric study, we investigated the impact of CSF findings assessed during the first relapse of MS on the short-term course of disability. Methods: We performed a retrospective observational study including MS patients with available CSF data after onset of first MS relapse. Clinical symptoms had to be accompanied by gadolinium-enhanced lesion on magnetic resonance imaging. Expanded Disability Status Scale (EDSS) assessments at timepoint of relapse and after relapse recovery were studied to analyze disability. A two-step multivariate linear regression analysis adjusted for EDSS at spinal tab, duration of symptoms, sex, time until post relapse EDSS assessment, immunotherapy post relapse, and relapse treatment with glucocorticoids/plasma exchange to predict relapse associated disability was run. Results: In the first step of the regression model, pathological albumin quotient (QAlb) [regression coefficient 0.50, 95% confidence interval (CI) (0.07–0.92), p = 0.02, n = 99] and CSF protein concentration [regression coefficient 0.84, 95% CI (0.33–1.35), p = 0.001, n = 99] predicted EDSS after relapse recovery. In the second step, the sum score of both predictors [range 0–2; n per value: 0 (n = 73), 1 (n = 10), 2 (n = 15)] confirmed the negative impact on course of disability after relapse [regression coefficient 0.38, 95% CI (0.13–0.62), p = 0.003, n = 98]. In this final multivariate linear regression model (p < 0.001; R2 0.34), also EDSS at lumbar puncture [regression coefficient 0.58, 95% CI (0.35–0.81), p < 0.001, n = 98] and time between symptom onset and CSF evaluation [regression coefficient 0.03, 95% CI (0.006–0.048), p = 0.01, n = 98] forecast subsequent disability Discussion: Our study conducted in MS patients during first relapse confirmed that both increased CSF protein concentration and pathological QAlb have a negative impact on EDSS after relapse. As secondary finding, we identified time from symptom onset to lumbar puncture as predictor of disability recovery after relapse.
Signs of alveolar collapse in idiopathic pulmonary fibrosis, hypersensitivity pneumonitis and systemic sclerosis revealed by inspiration and expiration computed tomography (2023)
Wittwer, Marco Fabian ; Kim, Soung-Yung ; Leichtle, Alexander ; Berezowska, Sabina ; Guler, Sabina A. ; Geiser, Thomas ; Heverhagen, Johannes ; Maurer, Britta ; Poellinger, Alexander
Idiopathic pulmonary fibrosis (IPF), hypersensitivity pneumonitis (HP) and systemic sclerosis (SSc) are among the most common entities that cause pulmonary fibrosis. Alveolar collapse with subsequent collapse induration of lung tissue is thought to contribute to the fibrotic transformation. The purpose of this study was to examine lung tissue in computed tomography (CT) of non-diseased appearance during expiration for signs of increased density suggesting collapsibility in fibrosing lung diseases. We further analyzed the diaphragmatic movements during the respiratory cycle to determine relationships between density differences and the apex–diaphragm diameter. Significant differences in attenuation changes between inspiration and expiration of unaffected lung parenchyma were detected between IPF and controls and between HP and controls for all lung lobes (p < 0.001). Only minor differences were found between SSc and controls. There was no clinically relevant difference between patients with IPF and those with HP. The measured absolute apex–diaphragm diameter in inspiration and expiration demonstrated a statistically significant difference between patients with IPF versus normal controls. However, the diaphragmatic excursions were not different between these groups. Compared to controls, CT lung density increases significantly more during expiration in the fibrotic lungs of IPF and HP patients. The observed increase in density might indicate the collapse of alveoli during expiration and may represent a common pathophysiologic feature of fibrosing lung diseases. The density changes and lung extensions do not have the same ratios across different diseases and controls.
Effects of freezing and thawing procedures on selected clinical chemistry parameters in plasma (2020)
Freiburghaus, Katrin ; Leichtle, Alexander B. ; Nakas, Christos T. ; Fiedler, Georg M. ; Largiadèr, Carlo R.
Standardized preprocessing of urine for proteome analysis (2010)
Fiedler, Georg Martin ; Ceglarek, Uta ; Leichtle, Alexander ; Thiery, Joachim
Computational evidence for laboratory diagnostic pathways: extracting predictive analytes for myocardial ischemia from routine hospital data (2022)
Liniger, Zara ; Ellenberger, Benjamin ; Leichtle, Alexander Benedikt
Background: Laboratory parameters are critical parts of many diagnostic pathways, mortality scores, patient follow-ups, and overall patient care, and should therefore have underlying standardized, evidence-based recommendations. Currently, laboratory parameters and their significance are treated differently depending on expert opinions, clinical environment, and varying hospital guidelines. In our study, we aimed to demonstrate the capability of a set of algorithms to identify predictive analytes for a specific diagnosis. As an illustration of our proposed methodology, we examined the analytes associated with myocardial ischemia; it was a well-researched diagnosis and provides a substrate for comparison. We intend to present a toolset that will boost the evolution of evidence-based laboratory diagnostics and, therefore, improve patient care. Methods: The data we used consisted of preexisting, anonymized recordings from the emergency ward involving all patient cases with a measured value for troponin T. We used multiple imputation technique, orthogonal data augmentation, and Bayesian Model Averaging to create predictive models for myocardial ischemia. Each model incorporated different analytes as cofactors. In examining these models further, we could then conclude the predictive importance of each analyte in question. Results: The used algorithms extracted troponin T as a highly predictive analyte for myocardial ischemia. As this is a known relationship, we saw the predictive importance of troponin T as a proof of concept, suggesting a functioning method. Additionally, we could demonstrate the algorithm’s capabilities to extract known risk factors of myocardial ischemia from the data. Conclusion: In this pilot study, we chose an assembly of algorithms to analyze the value of analytes in predicting myocardial ischemia. By providing reliable correlations between the analytes and the diagnosis of myocardial ischemia, we demonstrated the possibilities to create unbiased computational-based guidelines for laboratory diagnostics by using computational power in today’s era of digitalization.
Targeted and global pharmacometabolomics in everolimus-based immunosuppression: association of co-medication and lysophosphatidylcholines with dose requirement (2018)
Lesche, Dorothea ; Sigurdardottir, Vilborg ; Leichtle, Alexander B. ; Nakas, Christos T. ; Christians, Uwe ; Englberger, Lars ; Fiedler, Martin ; Largiadèr, Carlo R. ; Mohacsi, Paul ; Sistonen, Johanna
Multilingual RECIST classification of radiology reports using supervised learning (2023)
Mottin, Luc ; Goldman, Jean-Philippe ; Jäggli, Christoph ; Achermann, Rita ; Gobeill, Julien ; Knafou, Julien ; Ehrsam, Julien ; Wicky, Alexandre ; Gérard, Camille L. ; Schwenk, Tanja ; Charrier, Mélinda ; Tsantoulis, Petros ; Lovis, Christian ; Leichtle, Alexander ; Kiessling, Michael K. ; Michielin, Olivier ; Pradervand, Sylvain ; Foufi, Vasiliki ; Ruch, Patrick
Objectives: The objective of this study is the exploration of Artificial Intelligence and Natural Language Processing techniques to support the automatic assignment of the four Response Evaluation Criteria in Solid Tumors (RECIST) scales based on radiology reports. We also aim at evaluating how languages and institutional specificities of Swiss teaching hospitals are likely to affect the quality of the classification in French and German languages. Methods: In our approach, 7 machine learning methods were evaluated to establish a strong baseline. Then, robust models were built, fine-tuned according to the language (French and German), and compared with the expert annotation. Results: The best strategies yield average F1-scores of 90% and 86% respectively for the 2-classes (Progressive/Non-progressive) and the 4-classes (Progressive Disease, Stable Disease, Partial Response, Complete Response) RECIST classification tasks. Conclusions: These results are competitive with the manual labeling as measured by Matthew's correlation coefficient and Cohen's Kappa (79% and 76%). On this basis, we confirm the capacity of specific models to generalize on new unseen data and we assess the impact of using Pre-trained Language Models (PLMs) on the accuracy of the classifiers.
Anwendungsgebiete der Massenspektrometrie in der Klinischen Chemie und Laboratoriumsmedizin (2004)
Fiedler, G. M. ; Ceglarek, U. ; Lembcke, J. ; Baumann, S. ; Leichtle, Alexander ; Thiery, J.
Die Anwendung massenspektrometrischer Analysenmethoden gewinnt in der klinischen Labordiagnostik zunehmend an Bedeutung. In den vergangenen Jahren stieg die Anzahl von Applikationen in der Laboratoriumsmedizin, Pharmakologie und Toxikologie exponentiell an. Das Anwendungsspektrum reicht gegenwärtig von der Bestimmung einzelner klinisch-chemischer Analyte bis hin zur qualitativen und quantitativen Multiparameteranalyse. Die Kombination der Tandem-Massenspektrometrie mit Atmosphärendruck-Ionisationstechniken stellt heute infolge der hohen analytischen Sensitivität und Spezifität, der Robustheit, der geringen Analysekosten und insbesondere der Möglichkeit von Hochdurchsatzanalysen die Methode der Wahl für die Anwendung in der klinischen Labordiagnostik dar. Gegenwärtig wird diese Plattform bereits routinemäßig für das Neugeborenenscreening auf angeborene Stoffwechseldefekte, für das therapeutische Drugmonitoring sowie in der Hormondiagnostik eingesetzt. Darüber hinaus finden SELDITOF- oder MALDI-TOF-Verfahren Anwendung bei der Suche nach neuen Biomarkern im Rahmen der klinischen Proteomics. Ziel dieser Übersicht ist es, eine kurze Darstellung zum technischen Entwicklungsstand der Massenspektrometrie und zu aktuellen Applikationen in der labormedizinischen Diagnostik zu geben.
Short-term fasting attenuates overall steroid hormone biosynthesis in healthy young women (2022)
Magyar, Benjamin P. ; Santi, Maristella ; Sommer, Grit ; Nuoffer, Jean-Marc ; Leichtle, Alexander ; Grössl, Michael ; Fluck, Christa E.
Context Fasting is stressful for the human body. It is managed by metabolic adaptations maintaining energy homeostasis and involves steroid hormone biosynthesis, but the exact interplay between energy and steroid metabolism remains elusive. Women with polycystic ovary syndrome (PCOS) suffer from disturbed metabolism and androgen excess, while in women with anorexia nervosa, cortisol and androgen production are decreased. By contrast, starvation of steroidogenic cells shifts adrenal steroid biosynthesis toward enhanced androgen production. Aim This study investigated the effect of fasting on steroid production in healthy women. Methods Twenty healthy young women fasted for 48 hours; steroid profiles from plasma and urine samples were assessed at baseline, after 24 hours, and 48 hours by liquid and gas chromatography–mass spectrometry. Results Fasting did not change overall steroidogenesis, although it increased progestogen production and lowered relative mineralocorticoid, glucocorticoid, and androgen production. The largest decrease in urine metabolites was seen for β-cortol, dehydroepiandrosterone, and androstenediol; higher levels were found for pregnanediol in urine and progesterone and aldosterone in serum. Activity of 17α-hydroxylase/17,20-lyase (CYP17A1), essential for androgen biosynthesis, was decreased after fasting in healthy women as were 21-hydroxylase (CYP21A2) and 5α-reductase activities. By contrast, hydroxysteroid 11-beta dehydrogenase 1 (HSD11B1) activity for cortisol inactivation seemed to increase with fasting. Conclusion Significant changes in steroid metabolism occurred after 48 hours of fasting in healthy women. In contrast to metabolic changes seen at baseline in PCOS women compared to healthy women, and after starving of steroidogenic cells, no androgen excess was observed after short-term fasting in healthy young women.
The effect of a previous created distal arteriovenous-fistula on radial bone DXA measurements in prevalent renal transplant recipients (2018)
Walder, Anna ; Müller, Martin ; Dahdal, Suzan ; Sidler, Daniel ; Devetzis, Vasilios ; Leichtle, Alexander B. ; Fiedler, Martin G. ; Popp, Albrecht W. ; Lippuner, Kurt ; Vogt, Bruno ; Uehlinger, Dominik ; Huynh-Do, Uyen ; Arampatzis, Spyridon
Background Accelerated bone loss occurs rapidly following renal transplantation due to intensive immunosuppression and persistent hyperparathyroidism. In renal transplant recipients (RTRs) due to the hyperparathyroidism the non-dominant forearm is often utilized as a peripheral measurement site for dual-energy x-ray absorptiometry (DXA) measurements. The forearm is also the site of previous created distal arteriovenous fistulas (AVF). Although AVF remain patent long after successful transplantation, there are no data available concerning their impact on radial bone DXA measurements. Methods In this cross-sectional study we performed DXA in 40 RTRs with preexisting distal AVF (RTRs-AVF) to assess areal bone mineral density (aBMD) differences between both forearms (three areas) and compared our findings to patients with chronic kidney disease (CKD, n = 40), pre-emptive RTRs (RTRs-pre, n = 15) and healthy volunteers (n = 20). In addition, we assessed relevant demographic, biochemical and clinical aspects. Results We found a marked radial asymmetry between the forearms in RTRs with preexisting AVF. The radial aBMD at the distal AVF forearm was lower compared to the contralateral forearm, resulting in significant differences for all three areas analyzed: the Rad-1/3: median (interquartile range) in g/cm2, Rad-1/3: 0.760 (0.641–0.804) vs. 0.742 (0.642, 0.794), p = 0.016; ultradistal radius, Rad-UD: 0.433 (0.392–0.507) vs. 0.420 (0.356, 0.475), p = 0.004; and total radius, Rad-total: 0.603 (0.518, 0.655) vs. 0.599 (0.504, 0.642), p = 0.001). No such asymmetries were observed in any other groups. Lower aBMD in AVF forearm subregions resulted in misclassification of osteoporosis. Conclusions In renal transplant recipients, a previously created distal fistula may exert a negative impact on the radial bone leading to significant site-to-site aBMD differences, which can result in diagnostic misclassifications.
The BioRef infrastructure, a framework for real-time, federated, privacy-preserving, and personalized reference intervals: design, development, and application (2023)
Blatter, Tobias Ueli ; Witte, Harald ; Fasquelle-Lopez, Jules ; Nakas, Christos Theodoros ; Raisaro, Jean Louis ; Leichtle, Alexander Benedikt
Background: Reference intervals (RIs) for patient test results are in standard use across many medical disciplines, allowing physicians to identify measurements indicating potentially pathological states with relative ease. The process of inferring cohort-specific RIs is, however, often ignored because of the high costs and cumbersome efforts associated with it. Sophisticated analysis tools are required to automatically infer relevant and locally specific RIs directly from routine laboratory data. These tools would effectively connect clinical laboratory databases to physicians and provide personalized target ranges for the respective cohort population. Objective: This study aims to describe the BioRef infrastructure, a multicentric governance and IT framework for the estimation and assessment of patient group–specific RIs from routine clinical laboratory data using an innovative decentralized data-sharing approach and a sophisticated, clinically oriented graphical user interface for data analysis. Methods: A common governance agreement and interoperability standards have been established, allowing the harmonization of multidimensional laboratory measurements from multiple clinical databases into a unified “big data” resource. International coding systems, such as the International Classification of Diseases, Tenth Revision (ICD-10); unique identifiers for medical devices from the Global Unique Device Identification Database; type identifiers from the Global Medical Device Nomenclature; and a universal transfer logic, such as the Resource Description Framework (RDF), are used to align the routine laboratory data of each data provider for use within the BioRef framework. With a decentralized data-sharing approach, the BioRef data can be evaluated by end users from each cohort site following a strict “no copy, no move” principle, that is, only data aggregates for the intercohort analysis of target ranges are exchanged. Results: The TI4Health distributed and secure analytics system was used to implement the proposed federated and privacy-preserving approach and comply with the limitations applied to sensitive patient data. Under the BioRef interoperability consensus, clinical partners enable the computation of RIs via the TI4Health graphical user interface for query without exposing the underlying raw data. The interface was developed for use by physicians and clinical laboratory specialists and allows intuitive and interactive data stratification by patient factors (age, sex, and personal medical history) as well as laboratory analysis determinants (device, analyzer, and test kit identifier). This consolidated effort enables the creation of extremely detailed and patient group–specific queries, allowing the generation of individualized, covariate-adjusted RIs on the fly. Conclusions: With the BioRef-TI4Health infrastructure, a framework for clinical physicians and researchers to define precise RIs immediately in a convenient, privacy-preserving, and reproducible manner has been implemented, promoting a vital part of practicing precision medicine while streamlining compliance and avoiding transfers of raw patient data. This new approach can provide a crucial update on RIs and improve patient care for personalized medicine.
Doubling immunochemistry laboratory testing efficiency with the cobas e 801 module while maintaining consistency in analytical performance (2018)
Findeisen, P. ; Zahn, I. ; Fiedler, G. M. ; Leichtle, Alexander B. ; Wang, S. ; Soria, G. ; Johnson, P. ; Henzell, J. ; Hegel, J. K. ; Bendavid, C. ; Collet, N. ; McGovern, M. ; Klopprogge, K.
Standard-Arbeitsanleitung zur peripher venösen Blutentnahme für die labormedizinische Diagnostik (2017)
von Meyer, Alexander ; Cadamuro, Janne ; Streichert, Thomas ; Gurr, Eberhard ; Fiedler, G. Martin ; Leichtle, Alexander ; Petersmann, Astrid ; Pick, Karl-Heinz ; Orth, Matthias ; Risch, Lorenz ; Sonntag, Oswald ; Schmitt, York ; Wiegel, Bernhard ; Töpfer, Gottfried ; Guder, Walter G.
Role of D-Dimer testing in venous thromboembolism with concomitant renal insufficiency in critical care [Letter] (2017)
Pfortmueller, Carmen A. ; Lindner, Gregor ; Funk, Georg-Christian ; Leichtle, Alexander B. ; Fiedler, Georg M. ; Schwarz, Christoph ; Exadaktylos, Aristomenis K.
Diagnostic significance of high sensitivity troponin in diagnosis of blunt cardiac injury [Letter] (2014)
Pfortmueller, Carmen Andrea ; Lindner, Gregor ; Leichtle, Alexander Benedikt ; Fiedler, Georg Martin ; Exadaktylos, Aristomenis Konstantinos
A comparative study of pattern recognition algorithms for predicting the inpatient mortality risk using routine laboratory measurements (2019)
Schütz, Narayan ; Leichtle, Alexander B. ; Riesen, Kaspar
A metabolomics approach to uncover effects of different exercise modalities in type 1 diabetes (2017)
Bally, Lia ; Bovet, Cédric ; Nakas, Christos T. ; Zueger, Thomas ; Prost, Jean-Christophe ; Nuoffer, Jean-Marc ; Leichtle, Alexander B. ; Fiedler, Georg Martin ; Stettler, Christoph
Time requirement and feasibility of a systematic quality peer review of reporting in radiology (2021)
Maurer, Martin H. ; Brönnimann, Michael ; Schroeder, Christophe ; Ghadamgahi, Ehssan ; Streitparth, Florian ; Heverhagen, Johannes T. ; Leichtle, Alexander ; de Bucourt, Maximilian ; Meyl, Tobias Philipp
S-100 B concentrations are a predictor of decreased survival in patients with major trauma independently of head injury [Abstract] (2015)
Pfortmueller, C. A. ; Drexel, C. ; Krähenmann-Müller, S. ; Leichtle, Alexander B. ; Fiedler, G. M. ; Lindner, G. ; Exadaktylos, A. K.
Abstract 4004: Body mass is significantly associated with decreased sterol resorption and increased cholesterol synthesis: results of the population-based MONICA/KORA survey 1994/95 [Abstract] (2006)
Ceglarek, Uta ; Fiedler, Georg Martin ; Leichtle, Alexander ; Baumann, Sven ; Lang, Olga ; Loewel, Hannelore ; Thiery, Joachim ; Doering, Angela
Use of Diuretics is not associated with mortality in patients admitted to the emergency department: results from a cross-sectional study (2016)
Haider, Dominik G. ; Lindner, Gregor ; Wolzt, Michael ; Leichtle, Alexander Benedikt ; Fiedler, Georg-Martin ; Sauter, Thomas C. ; Fuhrmann, Valentin ; Exadaktylos, Aristomenis K.
Background Patients with diuretic therapy are at risk for drug-induced adverse reactions. It is unknown if presence of diuretic therapy at hospital emergency room admission is associated with mortality. Methods In this cross sectional analysis, all emergency room patients 2010 and 2011 at the Inselspital Bern, Switzerland were included. A multivariable logistic regression model was performed to assess the association between pre-existing diuretic medication and 28 day mortality. Results Twenty-two thousand two hundred thirty-nine subjects were included in the analysis. A total of 8.5 %, 2.5 %, and 0.4 % of patients used one, two, or three or more diuretics. In univariate analysis spironolactone, torasemide and chlortalidone use were associated with 28 day mortality (all p < 0.05). In a multivariate cox regression model no association with mortality was detectable (p > 0.05). No difference existed between patients with or without diuretic therapy (P > 0.05). Age and creatinine were independent risk factors for mortaliy (both p < 0.05). Conclusion Use of diuretics is not associated with mortality in an unselected cohort of patients presenting in an emergency room.
Collaborative challenges of multi-cohort projects in pharmacogenetics — why time is essential for meaningful collaborations (2022)
Franchini, Filippo ; Kusejko, Katharina ; Marzolini, Catia ; Tellenbach, Christoph ; Rossi, Simona ; Stampf, Susanne ; Koller, Michael ; Stoyanov, Jivko ; Möller, Burkhard ; Leichtle, Alexander Benedikt
Multi-cohort projects in medicine provide an opportunity to investigate scientific questions beyond the boundaries of a single institution and endeavor to increase the sample size for obtaining more reliable results. However, the complications of these kinds of collaborations arise during management, with many administrative hurdles. Hands-on approaches and lessons learned from previous collaborations provide solutions for optimized collaboration models. Here, we use our experience in running PGX-link, a Swiss multi-cohort project, to show the strategy we used to tackle different challenges from project setup to obtaining the relevant permits, including ethics approval. We set PGX-link in an international context because our struggles were similar to those encountered during the SYNCHROS (SYNergies for Cohorts in Health: integrating the ROle of all Stakeholders) project. We provide ad hoc solutions for cohorts, general project management strategies, and suggestions for unified protocols between cohorts that would ease current management hurdles. Project managers are not necessarily familiar with medical projects, and even if they are, they are not aware of the intricacies behind decision-making and consequently, of the time needed to set up multi-cohort collaborations. This paper is meant to be a brief overview of what we experienced with our multi-cohort project and provides the necessary practices for future managers.
A Bayesian spatiotemporal model for prevalence estimation of a VRE outbreak in a tertiary care hospital (2022)
Atkinson, A. ; Ellenberger, B. ; Piezzi, V. ; Kaspar, T. ; Endrich, O. ; Leichtle, Alexander B. ; Zwahlen, M. ; Marschall, J.
Background: There was a nosocomial outbreak of vancomycin-resistant enterococci (VRE) at the hospital between 1 st January 2018 and 31st July 2020. The goals of this study were to describe weekly prevalence, and to identify possible effects of the introduction of selected infection control measures. Methods: A room-centric analysis of 12 floors (243 rooms) of the main hospital building was undertaken, including data on 37,558 patients over 22,072 person-weeks for the first 2 years of the outbreak (2018e2019). Poisson Bayesian hierarchical models were fitted to estimate prevalence per room and per week, including both spatial and temporal randomeffects terms. Results: Exploratory data analysis revealed significant variability in prevalence between departments and floors, along with sporadic spatial and temporal clustering during colo- nization ‘flare-ups’. The oncology department experienced slightly higher prevalence over the 104-week study period [adjusted prevalence ratio (aPR) 4.8, 95% confidence interval (CI) 2.6e8.9; P<0.001; compared with general medicine], as did both the cardiac surgery (aPR 3.8, 95% CI 2.0e7.3; P<0.001) and abdominal surgery (aPR 3.7, 95% CI 1.8e7.6; P<0.001) departments. Estimated peak prevalence was reached in July 2018, at which point a number of new infection control measures (including the daily disinfection of rooms and room cleaning with ultraviolet light upon patient discharge) were introduced that resulted in decreasing prevalence (aPR 0.89 per week, 95% CI 0.87e0.91; P<0.001). Conclusion: Relatively straightforward but personnel-intensive cleaning with disinfectants and ultraviolet light provided tangible benefits in getting the outbreak under control. Despite additional complexity, Bayesian hierarchical models provide a more flexible platform to study transmission dynamics.
Real-world health data and precision for the diagnosis of acute kidney injury, acute-on-chronic kidney disease, and chronic kidney disease: observational study (2022)
Triep, Karen ; Leichtle, Alexander Benedikt ; Meister, Martin ; Fiedler, Georg Martin ; Endrich, Olga
Background: The criteria for the diagnosis of kidney disease outlined in the Kidney Disease: Improving Global Outcomes guidelines are based on a patient’s current, historical, and baseline data. The diagnosis of acute kidney injury, chronic kidney disease, and acute-on-chronic kidney disease requires previous measurements of creatinine, back-calculation, and the interpretation of several laboratory values over a certain period. Diagnoses may be hindered by unclear definitions of the individual creatinine baseline and rough ranges of normal values that are set without adjusting for age, ethnicity, comorbidities, and treatment. The classification of correct diagnoses and sufficient staging improves coding, data quality, reimbursement, the choice of therapeutic approach, and a patient’s outcome. Objective: In this study, we aim to apply a data-driven approach to assign diagnoses of acute, chronic, and acute-on-chronic kidney diseases with the help of a complex rule engine. Methods: Real-time and retrospective data from the hospital’s clinical data warehouse of inpatient and outpatient cases treated between 2014 and 2019 were used. Delta serum creatinine, baseline values, and admission and discharge data were analyzed. A Kidney Disease: Improving Global Outcomes–based SQL algorithm applied specific diagnosis-based International Classification of Diseases (ICD) codes to inpatient stays. Text mining on discharge documentation was also conducted to measure the effects on diagnosis. Results: We show that this approach yielded an increased number of diagnoses (4491 cases in 2014 vs 11,124 cases of ICD-coded kidney disease and injury in 2019) and higher precision in documentation and coding. The percentage of unspecific ICD N19-coded diagnoses of N19 codes generated dropped from 19.71% (1544/7833) in 2016 to 4.38% (416/9501) in 2019. The percentage of specific ICD N18-coded diagnoses of N19 codes generated increased from 50.1% (3924/7833) in 2016 to 62.04% (5894/9501) in 2019. Conclusions: Our data-driven method supports the process and reliability of diagnosis and staging and improves the quality of documentation and data. Measuring patient outcomes will be the next step in this project.
The MELD upgrade exception: a successful strategy to optimize access to liver transplantation for patients with high waiting list mortality (2022)
Dirchwolf, Melisa ; Becchetti, Chiara ; Gschwend, Sarah G. ; Toso, Christian ; Dutkowski, Philipp ; Immer, Franz ; Beyeler, Franziska ; Rossi, Simona ; Schropp, Jonas ; Dufour, Jean-François ; Banz, Vanessa ; Amico, Patrizia ; Axel, Andres ; Aubert, John-David ; Banz, Vanessa ; Sonja, Beckmann ; Beldi, Guido ; Benden, Christian ; Berger, Christoph ; Binet, Isabelle ; Bochud, Pierre-Yves ; Branca, Sanda ; Bucher, Heiner ; Carrel, Thierry ; Catana, Emmanuelle ; Chalandon, Yves ; de Geest, Sabina ; de Rougemont, Olivier ; Dickenmann, Michael ; Dreifuss, Joëlle L. ; Duchosal, Michel ; Fehr, Thomas ; Ferrari-Lacraz, Sylvie ; Garzoni, Christian ; Soccal, Paola G. ; Gaudet, Christophe ; Giostra, Emiliano ; Golshayan, Déla ; Hadaya, Karine ; Halter, Jörg ; Hauri, Dimitri ; Heim, Dominik ; Hess, Christoph ; Hillinger, Sven ; Hirsch, Hans ; Hirt, Patricia ; Hofbauer, Günther ; Huynh-Do, Uyen ; Immer, Franz ; Koller, Michael ; Laesser, Bettina ; Lang, Brian ; Lehmann, Roger ; Leichtle, Alexander ; Lovis, Christian ; Manuel, Oriol ; Marti, Hans-Peter ; Martin, Pierre Y. ; Martinelli, Michele ; Mellac, Katell ; Merçay, Aurélia ; Mettler, Karin ; Meylan, Pascal ; Mueller, Nicolas ; Müller, Antonia ; Müller, Thomas ; Müller-Arndt, Ulrike ; Müllhaupt, Beat ; Nägeli, Mirjam ; Pascual, Manuel ; Posfay-Barbe, Klara ; Rick, Juliane ; Rosselet, Anne ; Rossi, Simona ; Rothlin, Silvia ; Ruschitzka, Frank ; Schanz, Urs ; Schaub, Stefan ; Schnyder, Aurelia ; Schuurmans, Macé ; Simonetta, Federico ; Staufer, Katharina ; Stampf, Susanne ; Steiger, Jürg ; Stirniman, Guido ; Stürzinger, Ueli ; Toso, Christian ; Van Delden, Christian ; Venetz, Jean-Pierre ; Villard, Jean ; Vionnet, Julien ; Wick, Madeleine ; Wilhlem, Markus ; Yerly, Patrick
Machine learning in antibody diagnostics for inflammatory bowel disease subtype classification (2023)
Sokollik, Christiane ; Pahud de Mortanges, Aurélie ; Leichtle, Alexander B. ; Juillerat, Pascal ; Horn, Michael P.
Antibody testing in inflammatory bowel disease (IBD) can add to diagnostic accuracy of the main subtypes Crohn’s disease (CD) and ulcerative colitis (UC). Whether modern modeling techniques such as supervised and unsupervised machine learning are of value for finer distinction of subtypes such as IBD-unclassified (IBD-U) is not known. We determined the antibody profile of 100 adult IBD patients from the Swiss IBD cohort study with known subtype (50 CD, 50 UC) as well as of 76 IBD-U patients. We included ASCA IgG and IgA, p-ANCA, MPO- and PR3-ANCA, and xANCA measurements for computing different antibody panels as well as machine learning models. The AUC of an optimized antibody panel was 85% (95%CI, 78–92%) to distinguish CD from UC patients. The antibody profile of IBD-U patients was closely related to UC. No specific antibody profile was predictive for IBD-U nor for re-classification. The panel diagnostic was in favor of UC reclassification prediction with a correct assignment rate of 69.2–73.1% depending on the cut-off applied. Supervised machine learning could not distinguish between CD, UC, and IBD-U. More so, unsupervised machine learning suggested only two distinct clusters as a likely number of IBD subtypes. Antibodies in IBD are supportive in confirming clinical determined subtypes CD and UC but have limited capacity to predict IBD-U and reclassification during follow-up. In terms of antibody profiles, IBD-U is not a distinct subtype of IBD.
Diagnosis of urinary tract infections by urine flow cytometry: adjusted cut-off values in different clinical presentations (2019)
Schuh, Sabine K. ; Seidenberg, Ruth ; Arampatzis, Spyridon ; Leichtle, Alexander B. ; Hautz, Wolf E. ; Exadaktylos, Aristomenis K. ; Schechter, Clyde B. ; Müller, Martin
Background: Bacterium and leucocyte counts in urine can be measured by urine flow cytometry (UFC). They are used to predict significant bacterial growth in urine culture and to diagnose infections of the urinary tract. However, little information is available on appropriate UFC cut-off values for bacterium and leucocyte counts in specific clinical presentations. Objective To develop, validate, and evaluate adapted cut-off values that result in a high negative predictive value for significant bacterial growth in urine culture in common clinical presentation subgroups. Methods: This is a single center, retrospective, observational study with data from patients of the emergency department of Bern University Hospital, Switzerland, with suspected infections of the urinary tract. The patients presented with different symptoms, and urine culture and urine flow cytometry were performed. For different clinical presentations, the patients were grouped by (i) age (>65 years), (ii) sex, (iii) clinical symptoms (e.g., fever or dysuria), and (iv) comorbidities such as diabetes and immunosuppression. For each group, cut-off values were developed, validated, and analyzed using different strategies, i.e., linear discriminant analysis (LDA) and Youden’s index, and were compared with known cut-offs and cut-offs optimized for sensitivity. Results: 613 patients were included in the study. Significant bacterial growth in urine culture depended on clinical presentation and ranged from 32.3% in male patients to 61.5% in patients with urinary frequency. In all clinical presentations, the predictive accuracy of UFC leucocyte and UFC bacterium counts was good for significant bacterial growth in urine culture (AUC ≥ 0.88). The adapted LDA95 equations did not exhibit consistently high sensitivity. However, the in-house cut-offs (test positive if UFC leucocytes > 17/μL or UFC bacteria > 125/μL) were highly sensitive (>90%). In female, younger, and dysuric patients, even higher cut-offs for UFC leucocytes (169/μL, 169/μL, and 205/μL) exhibited high sensitivity. Specificity was insufficient (<0.9) for all tested cut-offs. Conclusions: For various clinical presentations, significant bacterial growth in urine culture can be excluded if flow cytometry measurements give a bacterial count of ≤125/μL or a leucocyte count of ≤17/μL. In female patients, dysuric patients, and patients younger than ≤65 years, the leucocyte cut-off can be increased to 170/μL.
Independent prognostic value of MRproANP (Midregional Proatrial Natriuretic Peptide) levels in patients with stroke is unaltered over time (2020)
Arnold, Markus ; Nakas, Christos ; Luft, Andreas ; Christ-Crain, Mirjam ; Leichtle, Alexander ; Katan, Mira
High-sensitive troponin measurement in emergency department patients presenting with syncope: a retrospective analysis (2013)
Lindner, Gregor ; Pfortmueller, Carmen A. ; Funk, Georg-Christian ; Leichtle, Alexander B. ; Fiedler, Georg Martin ; Exadaktylos, Aristomenis K.
Objective To study the relevance of high-sensitive troponin measurements in the acute workup in patients admitted to the emergency department of a large university hospital due to syncope. Methods In this retrospective study all patients admitted to the emergency department because of syncope of the Inselspital, University Hospital Bern between 01 August 2010 and 31 October 2012, with serial determination of high-sensitive troponin (baseline and three hours control) were included. Of all identified patients we obtained data on demographics, laboratory data, ECG as well as on outcome. A change in high-sensitive troponin in the three hours control of +/−30% compared to baseline was considered significant. Results A total of 121 patients with a mean age of 67 years (SD 16) were included in the study. 79 patients (65%) were male and 42 (35%) were female. There was no significant difference in the median high sensitive-troponin level at baseline and in the three hours control (0.01 mcg/L [0.003 to 0.022] versus 0.011 mcg/L [0.003 to 0.022], p = 0.47). Median percent change in high-sensitive troponin level between baseline and control was 0% (−9.1 to 5). 51 patients (42%) had elevated high-sensitive troponin levels at baseline with 7 patients (6%) showing a dynamic of +/−30% change from the baseline measurement in the 3 hours control. 3 of these patients received coronary angiography due to the dynamic in high-sensitive troponin, none of whom needed intervention for coronary revascularization. Conclusions On basis of the current study, where no single patient took benefit from determination of high-sensitive troponin, measurement of cardiac troponins should be reserved for patients with syncope presenting with symptoms suggestive for the presence of an acute cardiac syndrome.
Short-term application of ibuprofen before ovulation (2020)
Kohl Schwarz, A. S. ; Burkard, S. ; Mitter, V. R. ; Leichtle, Alexander B. ; Fink, A. ; von Wolff, M.
Aim of the study The aim was to analyse if ibuprofen, as a non-selective cyclooxygenase (COX) inhibitor, has any negative effect on oocyte competence and embryo quality. COX- inhibitors are popular over-the-counter analgesics. Whereas selective COX inhibitors have been shown to impair female fertility, data on non-selective COX inhibitors are poor. Hence, they have not been recommended for women trying to conceive. Methods This is an observational study comparing ibuprofen exposed and unexposed women from 18 to 42 years of age, using the model of natural cycle in vitro fertilisation (IVF) to determine oocyte and embryo quality. Follicular growth was monitored and if the follicle was mature (≥ 15mm size and estimated oestradiol level of ≥ 800pmol/l), ovulation was triggered. Women with luteinising hormone (LH) surge received 400mg ibuprofen every 8 hours to postpone ovulation, whereas women without LH surge received none (controls). Oocyte retrieval rate, oocyte maturity, fertilization rate, embryo development and embryo quality as well as implantation rate were analysed. Results Of the 111 women included, 63 received ibuprofen, and 48 did not. Rates of mature oocytes and implantation rate did not differ. Logistic regression showed no significant association of ibuprofen intake, LH- level or reason for infertility on embryo quality. Conclusion Based on our results, we suggest that, particularly within natural cycle IVF, ibuprofen does no harm around ovulation as analgesic treatment.
Simultaneous eicosanoid profiling and identification by liquid chromatography and hybrid triple quadrupole-linear ion trap mass spectrometry for metabolomic studies in human plasma (2009)
Kortz, Linda ; Geyer, Roland ; Ludwig, Ute ; Planert, Mathis ; Bruegel, Mathias ; Leichtle, Alexander ; Fiedler, Georg Martin ; Thiery, Joachim ; Ceglarek, Uta
Eicosanoids play a key role in many physiological and pathological processes and might therefore serve as interesting diagnostic targets. Methods for the analysis of arachidonic acid metabolites in cells and body fluids require high sensitivity and specificity because of the very low concentrations, similar chemical structures and short half-lives of these metabolites. We established a mass spectrometric method for the simultaneous identification and quantification of arachidonic acid metabolites in human plasma samples using solid phase extraction followed by liquid chromatography (LC) and hybrid triple quadrupole-linear ion trap (QqLIT) mass spectrometry. Quantitative analysis was performed using the 4000 QTrap tandem mass spectrometer in multiple reaction monitoring (MRM) mode. As part of an independent data acquisition experiment MRMs were used as survey scans, which dependently triggered enhanced product ion (EPI) scans. Compound identification was carried out by library search using a library based on EPI spectra of standard components (prostaglandins, thromboxanes, leukotrienes and isoprostanes). The newly developed compound library enables the verification of known and structural elucidation of unknown eicosanoid metabolites in human plasma. In conclusion, our mass spectrometric method allows the simultaneous identification and quantification of arachidonic acid metabolites in one single LC-MS/MS run.
Urine flow cytometry parameter cannot safely predict contamination of urine — a cohort study of a swiss emergency department using machine learning techniques (2022)
Müller, Martin ; Sägesser, Nadine ; Keller, Peter M. ; Arampatzis, Spyridon ; Steffens, Benedict ; Ehrhard, Simone ; Leichtle, Alexander B.
Background: Urine flow cytometry (UFC) analyses urine samples and determines parameter counts. We aimed to predict different types of urine culture growth, including mixed growth indicating urine culture contamination. Methods: A retrospective cohort study (07/2017–09/2020) was performed on pairs of urine samples and urine cultures obtained from adult emergency department patients. The dataset was split into a training (75%) and validation set (25%). Statistical analysis was performed using a machine learning approach with extreme gradient boosting to predict urine culture growth types (i.e., negative, positive, and mixed) using UFC parameters obtained by UF-4000, sex, and age. Results: In total, 3835 urine samples were included. Detection of squamous epithelial cells, bacteria, and leukocytes by UFC were associated with the different types of culture growth. We achieved a prediction accuracy of 80% in the three-class approach. Of the n = 126 mixed cultures in the validation set, 11.1% were correctly predicted; positive and negative cultures were correctly predicted in 74.0% and 96.3%. Conclusions: Significant bacterial growth can be safely ruled out using UFC parameters. However, positive urine culture growth (rule in) or even mixed culture growth (suggesting contamination) cannot be adequately predicted using UFC parameters alone. Squamous epithelial cells are associated with mixed culture growth.
Surgical site infections after kidney transplantation are independently associated with graft loss (2024)
Schreiber, Peter W. ; Hoessly, Linard D. ; Boggian, Katia ; Neofytos, Dionysios ; van Delden, Christian ; Egli, Adrian ; Dickenmann, Michael ; Hirzel, Cédric ; Manuel, Oriol ; Koller, Michael ; Rossi, Simona ; Banz, Vanessa ; Schmied, Bruno ; Guerke, Lorenz ; Matter, Maurice ; de Rougemont, Olivier ; Bonani, Marco ; Golshayan, Déla ; Schnyder, Aurelia ; Sidler, Daniel ; Haidar, Fadi ; Kuster, Stefan P. ; Stampf, Susanne ; Mueller, Nicolas J. ; Amico, Patrizia ; Aubert, John-David ; Banz, Vanessa ; Beckmann, Sonja ; Beldi, Guido ; Berger, Christoph ; Berishvili, Ekaterine ; Berzigotti, Annalisa ; Binet, Isabelle ; Bochud, Pierre-Yves ; Branca, Sanda ; Bucher, Heiner ; Catana, Emmanuelle ; Cairoli, Anne ; Chalandon, Yves ; De Geest, Sabina ; De Rougemont, Olivier ; De Seigneux, Sophie ; Dickenmann, Michael ; Dreifuss, Joëlle Lynn ; Duchosal, Michel ; Fehr, Thomas ; Ferrari-Lacraz, Sylvie ; Garzoni, Christian ; Golshayan, Déla ; Goossens, Nicolas ; Haidar, Fadi ; Halter, Jörg ; Heim, Dominik ; Hess, Christoph ; Hillinger, Sven ; Hirsch, Hans H. ; Hirt, Patricia ; Hoessly, Linard ; Hofbauer, Günther ; Huynh-Do, Uyen ; Immer, Franz ; Koller, Michael ; Laesser, Bettina ; Lamoth, Frédéric ; Lehmann, Roger ; Leichtle, Alexander ; Manuel, Oriol ; Marti, Hans-Peter ; Martinelli, Michele ; McLin, Valérie ; Mellac, Katell ; Merçay, Aurélia ; Mettler, Karin ; Mueller, Nicolas J. ; Müller-Arndt, Ulrike ; Müllhaupt, Beat ; Nägeli, Mirjam ; Oldani, Graziano ; Pascual, Manuel ; Passweg, Jakob ; Pazeller, Rosemarie ; Posfay-Barbe, Klara ; Rick, Juliane ; Rosselet, Anne ; Rossi, Simona ; Rothlin, Silvia ; Ruschitzka, Frank ; Schachtner, Thomas ; Schaub, Stefan ; Scherrer, Alexandra ; Schnyder, Aurelia ; Schuurmans, Macé ; Schwab, Simon ; Sengstag, Thierry ; Simonetta, Federico ; Stampf, Susanne ; Steiger, Jürg ; Stirnimann, Guido ; Stürzinger, Ueli ; Van Delden, Christian ; Venetz, Jean-Pierre ; Villard, Jean ; Vionnet, Julien ; Wick, Madeleine ; Wilhelm, Markus ; Yerly, Patrick
Surgical site infections (SSIs) are common health care-associated infections. SSIs after kidney transplantation (K-Tx) can endanger patient and allograft survival. Multicenter studies on this early posttransplant complication are scarce. We analyzed consecutive adult K-Tx recipients enrolled in the Swiss Transplant Cohort Study who received a K-Tx between May 2008 and September 2020. All data were prospectively collected with the exception of the categorization of SSI which was performed retrospectively according to the Centers for Disease Control and Prevention criteria. A total of 58 out of 3059 (1.9%) K-Tx recipients were affected by SSIs. Deep incisional (15, 25.9%) and organ/space infections (34, 58.6%) predominated. In the majority of SSIs (52, 89.6%), bacteria were detected, most frequently Escherichia coli (15, 28.9%), Enterococcus spp. (14, 26.9%), and coagulase-negative staphylococci (13, 25.0%). A BMI ≥25 kg/m2 (multivariable OR 2.16, 95% CI 1.07-4.34, P = .023) and delayed graft function (multivariable OR 2.88, 95% CI 1.56-5.34, P = .001) were independent risk factors for SSI. In Cox proportional hazard models, SSI was independently associated with graft loss (multivariable HR 3.75, 95% CI 1.35-10.38, P = .011). In conclusion, SSI was a rare complication after K-Tx. BMI ≥25 kg/m2 and delayed graft function were independent risk factors. SSIs were independently associated with graft loss.
Statistical learning and big data applications (2023)
Witte, Harald ; Blatter, Tobias U. ; Nagabhushana, Priyanka ; Schär, David ; Ackermann, James ; Cadamuro, Janne ; Leichtle, Alexander B.
The amount of data generated in the field of laboratory medicine has grown to an extent that conventional laboratory information systems (LISs) are struggling to manage and analyze this complex, entangled information (“Big Data”). Statistical learning, a generalized framework from machine learning (ML) and artificial intelligence (AI) is predestined for processing “Big Data” and holds the potential to revolutionize the field of laboratory medicine. Personalized medicine may in particular benefit from AI-based systems, especially when coupled with readily available wearables and smartphones which can collect health data from individual patients and offer new, cost-effective access routes to healthcare for patients worldwide. The amount of personal data collected, however, also raises concerns about patient-privacy and calls for clear ethical guidelines for “Big Data” research, including rigorous quality checks of data and algorithms to eliminate underlying bias and enable transparency. Likewise, novel federated privacy-preserving data processing approaches may reduce the need for centralized data storage. Generative AI-systems including large language models such as ChatGPT currently enter the stage to reshape clinical research, clinical decision-support systems, and healthcare delivery. In our opinion, AI-based systems have a tremendous potential to transform laboratory medicine, however, their opportunities should be weighed against the risks carefully. Despite all enthusiasm, we advocate for stringent added-value assessments, just as for any new drug or treatment. Human experts should carefully validate AI-based systems, including patient-privacy protection, to ensure quality, transparency, and public acceptance. In this opinion paper, data prerequisites, recent developments, chances, and limitations of statistical learning approaches are highlighted.
Zusammenhang zwischen Ernährungsfaktoren, Blutgerinnungsparametern und Leberfettgehalt (2025)
Schepp, Michael
Nach Angaben der WHO sind nicht übertragbare Krankheiten (engl. noncommunicable diseases, NCDs) für etwa 74 % der Todesfälle weltweit verantwortlich und haben sich in den letzten Jahrzehnten in alarmierendem Maße ausgebreitet. Wenngleich die bedeutsame Rolle der Ernährung bei der Primärprävention solcher Krankheiten inzwischen oft gut belegt ist, sind bestehende Forschungslücken weiter zu schließen. In der vorliegenden Arbeit wurden die Zusammenhänge zwischen Ernährungsfaktoren mit Parametern der Blutgerinnung und der nicht-alkoholischen Fettlebererkrankung, welches beide bedeutende Faktoren bei der Entstehung von NCDs sind, untersucht. Beide Arbeiten basieren auf Daten aus der KORA-Fit (S4)-Studie, einer Follow-Up-Studie der bevölkerungsbezogenen KORA-Kohortenstudie. Die 595 bzw. 689 Studienteilnehmenden in den beiden Projekten sind zwischen 1945 und 1964 geboren und leben in der Studienregion Augsburg. Daten zum Lebensmittelverzehr stammen aus wiederholten 24-Stunden-Erinnerungsprotokollen (24HFLs) und einem Verzehrshäufigkeitsfragebogen (FFQ). Antithrombin III, D-Dimere, Faktor VIII, Fibrinogen, Protein C, Protein S, aPTT, Quick-Wert und INR wurden im Citratplasma bestimmt. Die Ausprägung der Fettleber wurde durch die Berechnung des Fettleber-Index (FLI) erfasst. Drei Metabotyp-Cluster wurden mit Hilfe des K means-Verfahrens auf der Basis von fünf Parametern bestimmt. Die Ergebnisse zum Einfluss auf die Entwicklung einer Fettleber zeigen vorteilhafte gesundheitliche Zusammenhänge für den Verzehr pflanzlicher Lebensmitteln; dagegen zeigen ein vermehrter Verzehr von Lebensmitteln tierischen Ursprungs oder verarbeiteten Produkten eher ungünstige Folgen. Insbesondere der Verzehr von Butter und Milchprodukten war bei den Studienteilnehmenden mit einer klinisch relevanten Erhöhung der D-Dimer-Werte verbunden. Ein erhöhter Verzehr von Fleisch, Fisch, Eiern oder Softdrinks ging mit dem Auftreten einer Fettleber einher. Nüsse, Vollkornprodukte und eine mediterrane Ernährungsweise, die durch einen hohen Verzehr von pflanzlichen Lebensmitteln gekennzeichnet ist, zeigten eine signifikant inverse Assoziation mit dem Fettleber-Index. Zusätzlich wurden Interaktionseffekte mit den drei Metabotyp-Clustern beobachtet; dies bedeutet, dass die beobachteten Zusammenhänge von der Stoffwechselsituation der Studienteilnehmenden abhängen. Diese Ergebnisse sollten in weiteren prospektiven Studien genauer untersucht werden, um die Weiterentwicklung von Präventionsstrategien zur Verringerung des Risikos von kardio-metabolischen Krankheiten auf Bevölkerungsebene zu befördern.
Extending outbreak investigation with machine learning and graph theory: benefits of new tools with application to a nosocomial outbreak of a multidrug-resistant organism (2023)
Atkinson, Andrew ; Ellenberger, Benjamin ; Piezzi, Vanja ; Kaspar, Tanja ; Salazar-Vizcaya, Luisa ; Endrich, Olga ; Leichtle, Alexander B. ; Marschall, Jonas
Objective: From January 1, 2018, until July 31, 2020, our hospital network experienced an outbreak of vancomycin-resistant enterococci (VRE). The goal of our study was to improve existing processes by applying machine-learning and graph-theoretical methods to a nosocomial outbreak investigation. Methods: We assembled medical records generated during the first 2 years of the outbreak period (January 2018 through December 2019). We identified risk factors for VRE colonization using standard statistical methods, and we extended these with a decision-tree machine-learning approach. We then elicited possible transmission pathways by detecting commonalities between VRE cases using a graph theoretical network analysis approach. Results: We compared 560 VRE patients to 86,684 controls. Logistic models revealed predictors of VRE colonization as age (aOR, 1.4 (per 10 years), with 95% confidence interval [CI], 1.3–1.5; P < .001), ICU admission during stay (aOR, 1.5; 95% CI, 1.2–1.9; P < .001), Charlson comorbidity score (aOR, 1.1; 95% CI, 1.1–1.2; P < .001), the number of different prescribed antibiotics (aOR, 1.6; 95% CI, 1.5–1.7; P < .001), and the number of rooms the patient stayed in during their hospitalization(s) (aOR, 1.1; 95% CI, 1.1–1.2; P < .001). The decision-tree machine-learning method confirmed these findings. Graph network analysis established 3 main pathways by which the VRE cases were connected: healthcare personnel, medical devices, and patient rooms. Conclusions: We identified risk factors for being a VRE carrier, along with 3 important links with VRE (healthcare personnel, medical devices, patient rooms). Data science is likely to provide a better understanding of outbreaks, but interpretations require data maturity, and potential confounding factors must be considered.
Rapid centrifugation in the routine hemostasis laboratory (2019)
Wolfensberger, Nathan ; Georgiou, Georgios ; Giabbani, Evelyne ; Reusser, Marianne ; Njue, Linet M. ; Fiedler, Martin ; Leichtle, Alexander B. ; Nagler, Michael
Background The use of short and uniform centrifugation schemes contributes significantly to the successful automation of laboratory procedures. It is however unclear if this is applicable to the hemostasis laboratory. Objectives This article assesses the accuracy of measurements obtained with a rapid, high-speed centrifugation scheme in a large set of hemostasis tests, covering the full spectrum of values obtained in clinical practice, and using meaningful statistical measures. Methods Two citrated plasma samples were obtained from consecutive patients of a tertiary hospital with suspected abnormal hemostasis tests and processed with two centrifugation schemes in parallel: 1,500 × g for 10 minutes and 3,137 × g for 7 minutes. The following tests were conducted: prothrombin time (n = 125), international normalized ratio (n = 146), activated partial thromboplastin time (n = 119), thrombin time (n = 105), fibrinogen (n = 125), factor (F)II (n = 69), FV (n = 64), FVII (n = 64), FX (n = 67), FVIII (n = 55), FIX (n = 37), FXI (n = 35), and FXIII (n = 20), D-dimer (n = 34), antithrombin (n = 31), anti-Xa activity (n = 30), von Willebrand antigen (n = 25), and von Willebrand activity (VWF:GPIbM; n = 27). Results A wide range of results were obtained in all tests. Spearman's rank correlation coefficient was at least 0.95 for all tests except FV, FIX, and FXI. The coverage probability π at a given deviation index κ of 15% was above 0.9 for all tests except FV, FVII, FX, FVIII, FIX, FXI, and VWF:GPIbM, suggesting a lack of agreement. Conclusion Our results suggest that high-speed centrifugation is applicable to the majority of routine hemostasis parameters. The coverage probability was more sensitive than Spearman's rank correlation to detect disagreement among centrifugation schemes.
The links of hepcidin and erythropoietin in the interplay of inflammation and iron deficiency in a large observational study of rheumatoid arthritis (2019)
Scholz, Godehard A. ; Leichtle, Alexander B. ; Scherer, Almut ; Arndt, Uta ; Fiedler, Martin ; Aeberli, Daniel ; Finckh, Axel ; Gabay, Cem ; Kyburz, Diego ; Villiger, Peter M. ; Möller, Burkhard
Beating the noise: new statistical methods for detecting signals in MALDI-TOF spectra below noise level (2006)
Conrad, Tim O. F. ; Leichtle, Alexander ; Hagehülsmann, Andre ; Diederichs, Elmar ; Baumann, Sven ; Thiery, Joachim ; Schütte, Christof
Renal function–adjusted d-dimer levels in critically ill patients with suspected thromboembolism (2020)
Schefold, Joerg C. ; Gerber, Joël L. ; Angehrn, Michelle C. ; Müller, Martin ; Messmer, Anna S. ; Leichtle, Alexander B. ; Fiedler, Georg M. ; Exadaktylos, Aristomenis K. ; Pfortmueller, Carmen A.
The development and validation of different decision-making tools to predict urine culture growth out of urine flow cytometry parameter (2018)
Müller, Martin ; Seidenberg, Ruth ; Schuh, Sabine K. ; Exadaktylos, Aristomenis K. ; Schechter, Clyde B. ; Leichtle, Alexander B. ; Hautz, Wolf E.
Objective Patients presenting with suspected urinary tract infection are common in every day emergency practice. Urine flow cytometry has replaced microscopic urine evaluation in many emergency departments, but interpretation of the results remains challenging. The aim of this study was to develop and validate tools that predict urine culture growth out of urine flow cytometry parameter. Methods This retrospective study included all adult patients that presented in a large emergency department between January and July 2017 with a suspected urinary tract infection and had a urine flow cytometry as well as a urine culture obtained. The objective was to identify urine flow cytometry parameters that reliably predict urine culture growth and mixed flora growth. The data set was split into a training (70%) and a validation set (30%) and different decision-making approaches were developed and validated. Results Relevant urine culture growth (respectively mixed flora growth) was found in 40.2% (7.2% respectively) of the 613 patients included. The number of leukocytes and bacteria in flow cytometry were highly associated with urine culture growth, but mixed flora growth could not be sufficiently predicted from the urine flow cytometry parameters. A decision tree, predictive value figures, a nomogram, and a cut-off table to predict urine culture growth from bacteria and leukocyte count were developed, validated and compared. Conclusions Urine flow cytometry parameters are insufficient to predict mixed flora growth. However, the prediction of urine culture growth based on bacteria and leukocyte count is highly accurate and the developed tools should be used as part of the decision-making process of ordering a urine culture or starting an antibiotic therapy if a urogenital infection is suspected.
qSOFA score not predictive of in-hospital mortality in emergency patients with decompensated liver cirrhosis (2019)
Müller, M. ; Schefold, J. C. ; Leichtle, Alexander B. ; Srivastava, D. ; Lindner, G. ; Exadaktylos, A. K. ; Pfortmueller, C. A.
Parathyroid hormone and plasma phosphate are predictors of soluble α-klotho levels in adults of European descent (2020)
Dhayat, Nasser A. ; Pruijm, Menno ; Ponte, Belen ; Ackermann, Daniel ; Leichtle, Alexander Benedikt ; Devuyst, Olivier ; Ehret, Georg ; Guessous, Idris ; Pechère-Bertschi, Antoinette ; Pastor, Johanne ; Martin, Pierre-Yves ; Burnier, Michel ; Fiedler, Georg-Martin ; Vogt, Bruno ; Moe, Orson W. ; Bochud, Murielle ; Fuster, Daniel G.
Energy-adaptive Riemannian conjugate gradient method for density functional theory (2025)
Peterseim, Daniel ; Püschel, Jonas ; Stykel, Tatjana
Neural network enhanced polyconvexification of isotropic energy densities in computational mechanics (2025)
Balazi, Loïc ; Neumeier, Timo ; Peter, Malte A. ; Peterseim, Daniel
Neural network acceleration of iterative methods for nonlinear Schrödinger eigenvalue problems (2025)
Peterseim, Daniel ; Pietschmann, Jan-F. ; Püschel, Jonas ; Ruess, Kilian
Unechte Inlandsfälle unter der Brüssel Ia-VO (2025)
Okur, Salih
Homo cremator (2025)
Soentgen, Jens
Reply to Giancarlo Marra, Armando Stabile, Paolo Gontero, Francesco Montorsi, Alberto Briganti, and Giorgio Gandaglia’s Letter to the Editor re: Valentin H. Meissner, Isabel Rauscher, Kristina Schwamborn, et al. Radical prostatectomy without prior biopsy following multiparametric magnetic resonance imaging and prostate-specific membrane antigen positron emission tomography. Eur Urol. In press. https://doi.org/10.1016/j.eururo.2021.11.019: A Storm in a Teacup [Letter] (2022)
Meissner, Valentin H. ; Gschwend, Jürgen E. ; Heck, Matthias M.
Narrative review: prostate-specific membrane antigen-radioligand therapy in metastatic castration-resistant prostate cancer (2021)
Lunger, Lukas ; Tauber, Robert ; Feuerecker, Benedikt ; Gschwend, Jürgen E. ; Eiber, Matthias ; Heck, Matthias M.
Radioactive-labelled ligands targeting the prostate-specific membrane antigen (PSMA), a transmembrane protein overexpressed in prostate cancer (PC), have shown promising activity in treatment of metastatic castration-resistant prostate cancer (mCRPC). PSMA-617 and PSMA-I&T (imaging and therapy), both labeled to the beta-emitter lutetium-177 (Lu177), are most frequently used in clinical routine and have shown a favorable side-effect profile. Common side effects are transient xerostomia. Severe side effects, e.g., treatment-associated myelosuppression, are rare. Currently treatment with Lu177-PSMA outside clinical trials is available for compassionate use for patients who exhausted conventional therapies. Previous retro- and prospective studies reported promising results with ≥50% PSA declines observed in at least one third of patients. Retrospective data suggests worse biochemical response in patients with visceral metastases. Preliminary data from the randomized phase II (TheraP) trial showed an improved biochemical response rate of Lu177-PSMA as compared to cabazitaxel in patients progressing after docetaxel. Following these promising data, the results of the randomized, prospective phase III VISION study are eagerly anticipated. A major challenge remains resistance to radioligand therapy with Lu177-PSMA. As an alternative, a PSMA-ligand labeled to the alpha-emitter Actinium-225 (Ac-225) may be offered to patients, which shows promising activity in patients developing progression under Lu177-PSMA at the cost of higher toxicity. Mostly permanent xerostomia is a relevant side effect resulting in treatment discontinuation in up to a quarter of patients. This review summarizes the literature on activity and toxicity of PSMA-targeted radioligand therapy in mCRPC.
Cytoreductive radical prostatectomy after chemohormonal therapy in patients with primary metastatic prostate cancer (2022)
Babst, Christa ; Amiel, Thomas ; Maurer, Tobias ; Knipper, Sophie ; Lunger, Lukas ; Tauber, Robert ; Retz, Margitta ; Herkommer, Kathleen ; Eiber, Matthias ; von Amsberg, Gunhild ; Graefen, Markus ; Gschwend, Juergen ; Steuber, Thomas ; Heck, Matthias
Objective Cytoreductive radical prostatectomy (cRP) has been proposed as local treatment option in metastatic hormone-sensitive prostate cancer (mHSPC) to prevent local complications and potentially improve oncological outcomes. In this study, we examined the feasibility of a multimodal concept with primary chemohormonal therapy followed by cRP and analyzed prostate size reduction under systemic treatment, postoperative complication rates, as well as early postoperative continence. Methods In this retrospective study, 38 patients with mHSPC underwent cRP after primary chemohormonal therapy (3-monthly luteinising hormone-releasing hormone-analogue + six cycles 3-weekly docetaxel 75 mg/m2) at two centers between September 2015 and December 2018. Results Overall, 10 (26%) patients had high volume and 28 (74%) patients had low volume disease at diagnosis, according to CHAARTED definition. Median prostate-specific antigen (PSA) decreased from 65 ng/mL (interquartile range [IQR] 35.0–124.5 ng/mL) pre-chemotherapy to 1 ng/mL (IQR 0.3–1.7 ng/mL) post-chemotherapy. Prostate gland volume was significantly reduced by a median of 50% (IQR 29%–56%) under chemohormonal therapy (p = 0.003). Postoperative histopathology showed seminal vesicle invasion in 33 (87%) patients and negative surgical margins in 17 (45%) patients. Severe complications (Grade 3 according to Clavien-Dindo) were observed in 4 (11%) patients within 30 days. Continence was reached in 87% of patients after 1 month and in 92% of patients after 6 months. Median time to castration-resistance from begin of chemohormonal therapy was 41.1 months and from cRP was 35.9 months. Postoperative PSA-nadir ≤1 ng/mL versus >1 ng/mL was a significant predictor of time to castration-resistance after cRP (median not reached versus 5.3 months; p<0.0001). Conclusion We observed a reduction of prostate volume under chemohormonal therapy going along with a low postoperative complication and high early continence rate. However, the oncologic benefit from cRP is still under evaluation.
Outcomes of palliative cystectomy in patients with locally advanced pT4 bladder cancer (2021)
Maisch, Phillipp ; Lunger, Lukas ; Düwel, Charlotte ; Schmid, Sebastian C. ; Horn, Thomas ; Gschwend, Jürgen E. ; Sauter, Andreas ; Heck, Matthias M.
Regional lymph node metastasis on prostate specific membrane antigen positron emission tomography correlates with decreased biochemical recurrence-free and therapy-free survival after radical prostatectomy: a retrospective single-center single-arm observational study (2021)
Amiel, Thomas ; Würnschimmel, Christoph ; Heck, Matthias ; Horn, Thomas ; Nguyen, Noemi ; Budäus, Lars ; Knipper, Sophie ; Wenzel, Mike ; Rauscher, Isabel ; Eiber, Matthias ; Wang, Hui ; Maurer, Tobias
PSMA-ligand uptake in posttherapeutic 177Lu-PSMA scintigraphy to assess response in patients with mCRPC [Abstract] (2021)
Karimzadeh, A. ; Heck, Matthias ; Gschwend, J. E. ; Weber, W. A. ; Eiber, M. ; Rauscher, I.
KLK3 and TMPRSS2 for molecular lymph-node staging in prostate cancer patients undergoing radical prostatectomy (2021)
Lunger, Lukas ; Retz, Margitta ; Bandur, Miriam ; Souchay, Marc ; Vitzthum, Elisabeth ; Jäger, Marion ; Weirich, Gregor ; Schuster, Tibor ; Autenrieth, Michael ; Kübler, Hubert ; Maurer, Tobias ; Thalgott, Mark ; Herkommer, Kathleen ; Koll, Florestan ; Gschwend, Jürgen E. ; Nawroth, Roman ; Heck, Matthias M.
Background Lymph-node (LN) metastasis in prostate cancer (PC) is a main risk factor for tumor recurrence after radical prostatectomy (RP). Molecular analysis facilitates detection of small-volume LN metastases with higher sensitivity than histopathology. We aimed to prospectively evaluate six candidate gene markers for detection of pelvic LN metastases and to determine their ability to predict biochemical recurrence-free survival (bRFS) in patients treated with RP. Methods The expression of kallikrein 2, 3, and 4 (KLK2, KLK3, and KLK4), prostate-specific membrane antigen (PSMA), transmembrane serine protease 2 (TMPRSS2) and transient receptor potential cation channel subfamily M member 8 (TRPM8) was assessed using qPCR. We analyzed LNs from 111 patients (intermediate PC, n = 32 (29%); high-risk PC, n = 79 (71%)) who underwent RP and extended pelvic lymph-node dissection without neoadjuvant treatment. Results Overall, 2411 LNs were examined by molecular and histopathologic examination. Histopathology detected 69 LN metastases in 28 (25%) patients. KLK2 and KLK3 diagnostically performed best and classified all pN1-patients correctly as molecular node-positive (molN1/pN1). The concordance on LN level was best for KLK3 (96%). KLK2, KLK3, KLK4, PSMA, TMPRSS2, and TRPM8 reclassified 27 (24%), 32 (29%), 29 (26%), 8 (7%), 13 (12%), and 23 (21%) pN0-patients, respectively, as node-positive (pN0/molN1). On multivariable cox regression analysis molecular LN status (molN1 vs. molN0) using KLK3 (HR 4.0, p = 0.04) and TMPRSS2 (HR 5.1, p = 0.02) were independent predictors of bRFS. Median bRFS was shorter in patients with only molecular positive LNs (molN1/pN0) for KLK3 (24 months, p = 0.001) and for TMPRSS2 (12 months, p < 0.001) compared to patients with negative nodes (molN0/pN0) (median bRFS not reached). Conclusions For diagnostic purposes, KLK3 showed highest concordance with histopathology for detection of LN metastases in PC patients undergoing RP. For prognostic purposes, KLK3 and TMPRSS2 expression were superior to histopathologic LN status and other transcripts tested for molecular LN status. We suggest a combined KLK3/TMPRSS2 panel as a valuable diagnostic and prognostic tool for molecular LN analysis.
MP11-12 Regional lymph node metastasis on PSMA PET correlates with decreased BCR-free and therapy-free survival after radical prostatectomy [Abstract] (2021)
Wuernschimmel, Christoph ; Amiel, Thomas ; Heck, Matthias ; Horn, Thomas ; Nguyen, Noemi ; Budaeus, Lars ; Knipper, Sophie ; Wenzel, Mike ; Rauscher, Isabel ; Eiber, Matthias ; Wang, Hui ; Maurer, Tobias
Radical prostatectomy without prior biopsy following multiparametric magnetic resonance imaging and prostate-specific membrane antigen positron emission tomography (2022)
Meissner, Valentin H. ; Rauscher, Isabel ; Schwamborn, Kristina ; Neumann, Jan ; Miller, Gregor ; Weber, Wolfgang ; Gschwend, Jürgen E. ; Eiber, Matthias ; Heck, Matthias M.
A0511 - Cohort study of oligorecurrent prostate cancer patients: oncological outcomes of patients treated with salvage lymph node dissection via PSMA radioguided surgery [Abstract] (2022)
Knipper, S. ; Mehdi Irai, M. ; Simon, R. ; Köhler, D. ; Isabel, R. ; Eiber, M. ; Van Leeuwen, F. W. B. ; Van Leeuwen, P. ; Budäus, L. ; Steuber, T. ; Graefen, M. ; Tennstedt, P. ; Heck, Matthias ; Horn, T. ; Maurer, T.
Active surveillance for small renal masses in elderly patients does not increase overall mortality rates compared to primary intervention: a propensity score weighted analysis (2021)
Marchioni, Michele ; Cheaib, Joseph G. ; Takagi, Toshio ; Pavan, Nicola ; Antonelli, Alessandro ; Everaerts, Wourter ; Heck, Matthias ; Rha, Koon H. ; Mottrie, Alexandre ; Kaouk, Jihad ; Capitanio, Umberto ; Lima, Estevão ; Veccia, Alessandro ; Crivellaro, Simone ; Linares, Estefania ; Celia, Antonio ; Porpiglia, Francesco ; Autorino, Riccardo ; Di Nicola, Marta ; Schips, Luigi ; Pierorazio, Phillip M. ; Mir, Maria Carmen
A0053 - Ultrasound based CEUS-Bosniak classification for cystic renal lesions: an 8-year clinical experience [Abstract] (2022)
Herms, E. ; Slotta-Huspenin, J. ; Gärtner, A. ; Preuss, S. ; Hauner, K. ; Heck, Matthias ; Autenrieth, M. ; Maurer, T. ; Kübler, H. ; Holzapfel, K. ; Sauter, A. ; Schwarz-Boeger, U. ; Wagenpfeil, S. ; Heemann, U. ; Stock, K. F.
A0088 - Hospital rating websites play a minor role in hospital choice of uro-oncologic patients in Germany: results of the multicentric NAVIGATOR-study [Abstract] (2022)
Groeben, C. ; Boehm, K. ; Sonntag, U. ; Nestler, T. ; Struck, J. ; Heck, Matthias ; Baunacke, M. ; Uhlig, A. ; Koelker, M. ; Meyer, C. P. ; Becker, B. ; Salem, J. ; Huber, J. ; Leitsmann, M.
Cohort study of oligorecurrent prostate cancer patients: oncological outcomes of patients treated with salvage lymph node dissection via PSMA radioguided surgery [Abstract] (2022)
Maurer, Tobias ; Mehdi Irai, Mehrdad ; Rauscher, Isabel ; Simon, Ricarda ; Eiber, Matthias ; van Leeuwen, Fijs W. B. ; van Leeuwen, Pim ; Budaeus, Lars ; Steuber, Thomas ; Graefen, Markus ; Tennstedt, Pierre ; Heck, Matthias ; Horn, Thomas ; Knipper, Sophie
18F-rhPSMA-7 PET for the detection of biochemical recurrence of prostate cancer after curative-intent radiation therapy: a bicentric retrospective study (2022)
Ilhan, Harun ; Kroenke, Markus ; Wurzer, Alexander ; Unterrainer, Marcus ; Heck, Matthias ; Belka, Claus ; Knorr, Karina ; Langbein, Thomas ; Rauscher, Isabel ; Schmidt-Hegemann, Nina-Sophie ; Schiller, Kilian ; Bartenstein, Peter ; Wester, Hans-Jürgen ; Eiber, Matthias
177-Lu-PSMA I&T therapy in patients with metastatic castration-resistant prostate cancer (mCRPC): evaluation of treatment response using PSMA-ligand PET/CT [Abstract] (2022)
Zaum, R. ; Hein, S. ; Rauscher, I. ; Weber, W. A. ; Gafita, A. ; Heck, Matthias ; Eiber, M.
Cohort study of oligorecurrent prostate cancer patients: oncological outcomes of patients treated with salvage lymph node dissection via prostate-specific membrane antigen (PSMA) radioguided surgery (2023)
Knipper, Sophie ; Mehdi Irai, Mehrdad ; Simon, Ricarda ; Koehler, Daniel ; Rauscher, Isabel ; Eiber, Matthias ; van Leeuwen, Fijs W. B. ; van Leeuwen, Pim ; de Barros, Hilda ; van der Poel, Henk ; Budäus, Lars ; Steuber, Thomas ; Graefen, Markus ; Tennstedt, Pierre ; Heck, Matthias M. ; Horn, Thomas ; Maurer, Tobias
Evaluation of the prognostic value of the PET eligibility criteria of the TheraP trial [Abstract] (2022)
Karimzadeh, A. ; Schweiger, L. ; Wehrstedt, R. ; Heck, Matthias ; Tauber, R. ; Haller, B. ; Gschwend, J. E. ; Knorr, K. ; D'Alessandria, C. ; Weber, W. A. ; Eiber, M. ; Rauscher, I.
177 Lu-PSMA-I&T for treatment of metastatic castration-resistant prostate cancer: prognostic value of scintigraphic and clinical biomarkers (2023)
Karimzadeh, Amir ; Heck, Matthias ; Tauber, Robert ; Knorr, Karina ; Haller, Bernhard ; D'Alessandria, Calogero ; Weber, Wolfgang A. ; Eiber, Matthias ; Rauscher, Isabel
Ultrasound-based "CEUS-Bosniak" classification for cystic renal lesions: an 8-year clinical experience (2023)
Herms, Elena ; Weirich, Gregor ; Maurer, Tobias ; Wagenpfeil, Stefan ; Preuss, Stephanie ; Sauter, Andreas ; Heck, Matthias ; Gärtner, Anita ; Hauner, Katharina ; Autenrieth, Michael ; Kübler, Hubert P. ; Holzapfel, Konstantin ; Schwarz-Boeger, Ulrike ; Heemann, Uwe ; Slotta-Huspenina, Julia ; Stock, Konrad Friedrich
Purpose: Renal cysts comprise benign and malignant entities. Risk assessment profits from CT/MRI imaging using the Bosniak classification. While Bosniak-IIF, -III, and -IV cover complex cyst variants, Bosniak-IIF and -III stand out due to notorious overestimation. Contrast-enhanced ultrasound (CEUS) is promising to overcome this deficit but warrants standardization. This study addresses the benefits of a combined CEUS and CT/MRI evaluation of renal cysts. The study provides a realistic account of kidney tumor boards' intricacies in trying to validate renal cysts. Methods: 247 patients were examined over 8 years. CEUS lesions were graded according to CEUS-Bosniak (IIF, III, IV). 55 lesions were resected, CEUS-Bosniak- and CT/MRI-Bosniak-classification were correlated with histopathological diagnosis. Interobserver agreement between the classifications was evaluated statistically. 105 lesions were followed by ultrasound, and change in CEUS-Bosniak-types and lesion size were documented. Results: 146 patients (156 lesions) were included. CEUS classified 67 lesions as CEUS-Bosniak-IIF, 44 as CEUS-Bosniak-III, and 45 as CEUS-Bosniak-IV. Histopathology of 55 resected lesions revealed benign cysts in all CEUS-Bosniak-IIF lesions (2/2), 40% of CEUS-Bosniak-III and 8% of CEUS-Bosniak-IV, whereas malignancy was uncovered in 60% of CEUS-Bosniak-III and 92% of CEUS-Bosniak-IV. Overall, CEUS-Bosniak-types matched CT/MRI-Bosniak types in 58% (fair agreement, κ = 0.28). CEUS-Bosniak resulted in higher stages than CT/MRI-Bosniak (40%). Ultrasound follow-up of 105 lesions detected no relevant differences between CEUS-Bosniak-types concerning cysts size. 99% of lesions showed the same CEUS-Bosniak-type. Conclusion: The CEUS-Bosniak classification is an essential tool in clinical practice to differentiate and monitor renal cystic lesions and empowers diagnostic work-up and patient care.
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